Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10017426 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4513
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008995	Metagenome / Metatranscriptome	324	Y
F012339	Metagenome / Metatranscriptome	281	Y
F017466	Metagenome / Metatranscriptome	240	Y
F021290	Metagenome / Metatranscriptome	219	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

324

Metagenome / Metatranscriptome

281

Metagenome / Metatranscriptome

240

Metagenome / Metatranscriptome

219

Protein ID	Family	RBS	Sequence
Ga0114973_100174262	F012339	AGG	MSNQPFTAGLTTPPVINPHSPASNGYKQQPVYIPGVLDQTRQLFQPVVSEPPKDAK*
Ga0114973_100174263	F008995	AGGA	MAAVQVINTASNVAWTTDKVEFATTLSNVTFQVSVQQLTYVLANGATANGSMSTTVGNIYANAIQIPGNTVQQYYVGAGNYLNVLSGNSGFTATAIGTATSALSGVVGVGS*
Ga0114973_100174264	F021290	AGG	VRAKEFVAEGGGRGGTRSAASHEFERAHPGLVGPGGKGDVYWGRYYDHYRVATLAGMDLEQLENSDDINFFGNLPVFSAYTEHDRKKLTAIMKKLGMKPKDFIGNGSHEADYVNHTSPVSAFKGYKK*
Ga0114973_100174266	F017466	N/A	MRAKEFVLEAKFGSAQDIPADFKKLPKSHSSAMKGMISMPDISMTKQGGSPYTQWRFGIAMAGAPDYPTEPAGAFAGDPLLATYSDADLDIINAAAKSVGAGEVKKLTDNRSTEADHVHKTSPVTGFKGFK*

Protein ID

Family

RBS

Sequence

Ga0114973_100174262

AGG

MSNQPFTAGLTTPPVINPHSPASNGYKQQPVYIPGVLDQTRQLFQPVVSEPPKDAK*

Ga0114973_100174263

AGGA

MAAVQVINTASNVAWTTDKVEFATTLSNVTFQVSVQQLTYVLANGATANGSMSTTVGNIYANAIQIPGNTVQQYYVGAGNYLNVLSGNSGFTATAIGTATSALSGVVGVGS*

Ga0114973_100174264

AGG

VRAKEFVAEGGGRGGTRSAASHEFERAHPGLVGPGGKGDVYWGRYYDHYRVATLAGMDLEQLENSDDINFFGNLPVFSAYTEHDRKKLTAIMKKLGMKPKDFIGNGSHEADYVNHTSPVSAFKGYKK*

Ga0114973_100174266

N/A

MRAKEFVLEAKFGSAQDIPADFKKLPKSHSSAMKGMISMPDISMTKQGGSPYTQWRFGIAMAGAPDYPTEPAGAFAGDPLLATYSDADLDIINAAAKSVGAGEVKKLTDNRSTEADHVHKTSPVTGFKGFK*

NMPFamsDB