Scaffold Ga0114973_10015301

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10015301
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4849
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011208	Metagenome	293	N
F014827	Metagenome / Metatranscriptome	259	Y
F024501	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100153011	F011208	AGGAG	MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWQKWRTENGRPAIK
Ga0114973_100153012	F024501	AGAAGG	MKHPKQLDEVGITESYLRKMAKKEGLSYKKAVQIAMEQWGEYSLKLINKIVAEDIKTK*
Ga0114973_100153019	F014827	N/A	VLRAILEIIAAVFRIIPNWKEKRTQNIEGEWKHNRDAIERDLRGESWWLRNNDTSNTHDRDS*