NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10014833

Scaffold Ga0114973_10014833


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10014833 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4936
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F017628Metagenome / Metatranscriptome239Y
F040590Metagenome161Y
F054866Metagenome139Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100148331F017628AGGAMATYDIDALKEDLPTAKDLAQFVYDRTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYVTDVNPYIDKKELIPEDDLPPLPERPADLPDIESRIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVFQVAVGERLNKFGQRVPEKY
Ga0114973_100148334F040590GAGGMSAYGKVISGGKAMTSGLTKGINDKLKNYAESHKYSAMLATAVGKTFNQNPLSDNHLDNINGSKFTTPKLPKKV*
Ga0114973_100148335F099270AGGMSTNFLYAQAPNRKGNVSKHTVSKSGGCTNVTAAKHGTATPKGNQGAPKASGNVYPVGNKVSVSTHADYCGTIKNDGYMNSDRNNYLK*
Ga0114973_100148337F001915AGGAGMEWRLAHPLDDVDDIVEMADTIFGQEADGILTRDRNVFRKHVTVTATMQLFDKGREFLAVCRDVDTLVAYCWFDRGGYTTYANEEISNAKFHHLDLSLPVRTRVRLLNEMIDQHILWASSWGIPVICSTSIRAEHNGFMKIHKKRGFTVNGSYAWGRTAELLKDMK*
Ga0114973_100148338F054866AGGAMNYTIKHGSIAALQIVTLPTGEELSVTNAADGSEINLLLLPLEVRAAVNRQFGMIFSLPYAKRQSFIDSSIPFIVEA*
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