Scaffold Ga0114973_10013404

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10013404
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5220
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F005299	Metagenome / Metatranscriptome	405	Y
F008359	Metagenome / Metatranscriptome	334	Y
F025025	Metagenome	203	Y
F032282	Metagenome	180	Y
F053296	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100134041	F053296	GAG	MSQCVKPQSMVEFTDFMGRVHKVSVRNNTELKKQMKFFGMLKRESSTIKQIIASYPIKLGKVEKRFLAECKRELKSVLKLTNKQMEIVLG*
Ga0114973_1001340410	F004696	N/A	MDFAINKLKDDEVVLMKKIKSLKDGKPKWKCNEELVELRSAIKLLERYNEMTSQQMENEDEYLMELFEEHPPKAKA*
Ga0114973_1001340411	F032282	N/A	MNSNTIVNTLHSIDIERYNSIEEERNKILNDENFIQWCKEMNIGIRVEVKDYRSNELMNQYTNYPKWVSRQF*
Ga0114973_100134042	F008359	N/A	MKSKVNQKSLYEIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFVDSYTDTKMTIGIVKNIMNEIKLK*
Ga0114973_100134045	F005299	N/A	MNKNNTPKHNPHTFDGFDTANDTWIEKVGYDSANKRMIAKVYKHLYNVMNFVTKPSWTTIIREMLIEDGRLNEVKVNGYYSTIRKNLKDIGVIQYNGRKGLSKGKNWDRFYSDEDWSWFKTNTNSGGYGIIVK*
Ga0114973_100134047	F025025	N/A	MNKKTNEIKLGKRGYKAIVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYIGEIEVETKMDKLETSLIKNVLSKKDKKELLATSVLEGALVSTKLSLDPTYSQFYNGGSISVETTKGNGEDTDK*