Scaffold Ga0114973_10010400

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10010400
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6040
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011668	Metagenome / Metatranscriptome	288	Y
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1001040010	F025459	AGGAGG	MKMTLEFDETERYEHEVACKALDILILVDDIDQELRSALKHESGEFAELDEDTMEAVRAWIWKERSDRNIPELK*
Ga0114973_100104005	F034182	AGGCGG	MNGHTFHTFIGTGAPAMAVLISFSEVEAWLRVASLVLGICIGAVSLYKMLKAKKP*
Ga0114973_100104007	F011668	AGG	MNAKKIALWMVLISFAFLGMAFLTSCAGFQNPSLCVKTDYGTLCYQLPDIQGLKK*
Ga0114973_100104009	F048162	N/A	LKKKRQPTVESDRTEALAEAKRLLSEHYDCGFTIVSWEQGGETMHGEFVFGNRYAVEGLAGDSFSILFPDDEEEEEDEDA*