Scaffold Ga0114973_10009648

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10009648
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6306
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F035763	Metagenome / Metatranscriptome	171	N
F045094	Metagenome / Metatranscriptome	153	N
F054865	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100096481	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFSIVFIDFLNPSDKRSKYPPRVAAVATVIALLELWFSIQGKSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRKRNPPKPKGSALKMNATTSQPIKFTMAICFMFAVYVLPAQKNHFMAYNYMSIEKIGGDKLERTFYDTNEEQHYIDTITTDYLTSWNFWDGYSRSHLDNDLFMTYGTQTMKYIKSKQLWYYRGKYYDYKDLLKFLVRYSKKNFVNKKIQW*
Ga0114973_1000964811	F003786	N/A	MSNLTQYQPRNSDEQAIITARSNRIANLDQKDAYKQTLNVISSVFPMYGIDGDFAFYANIAKEIVKIFGQIAANEIEIAFRLFSAESLELDSDIKFYGKANMHTIGKILNGYMVYRRKIIASHDNEIAALRHQKDMEERGQKEREKLYAEFPTMIKDFSGKTFNDVPLYWYDLCVQFNMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK*
Ga0114973_1000964812	F008078	N/A	MKQTPKEKAKELFNHYYILIQDIGGELGQEILVSILAKHCALFAAREVLKQKWNIEVEGSYDEYYYWEEVEHEIENYEE*
Ga0114973_1000964813	F035763	N/A	FTPIKTKINNPFSRQAYHDFISNDPVFKREKISDKKEKAEPSETYLCFSAFASTYERLAGVTYPSDKGHFIMTAKDGANCKKLVTWLKKVSASEQAPDEMVTMFTTAAWQISDKWLKSNFTISNIYSQANNIYTKFMYNNPAAQEKRRQEEIERLVNEYQP*
Ga0114973_100096482	F054865	N/A	MEVKTNRYIIKYKEGFVNVPANNVEEAIERFKELRIETSAKELTIVPSNEMYKRKEEIFGSK*
Ga0114973_100096485	F002778	N/A	VKEYNAQMMEIKAFCDEVNTWISVAPSAEDLDSCDQYLRQLSAYYSRYTVISGINESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT*
Ga0114973_100096488	F019647	AGAAG	MKITKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQAITLIDDNGKFKVLEDDTQKMPAPTGVAVIEQQIAEKPDLAAIVFEMSAIYTQAYIDIYNKISEAGVPPESATAATSTIFIQVFQKLK*
Ga0114973_100096489	F045094	N/A	MNDISKRFASYLMDDYKIKGTTEEDVDKAINRIFRFELLDDAQQVLFVEIMNEALNVPWIAEQLTDVWDRYNQEIYDCQKEDSYENN*