Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10009647 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10009647 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6307
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (15.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6307

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (15.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003626	Metagenome / Metatranscriptome	476	Y
F010321	Metagenome / Metatranscriptome	305	Y
F012573	Metagenome / Metatranscriptome	279	Y
F019827	Metagenome / Metatranscriptome	227	Y
F020497	Metagenome	223	Y
F028170	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000964712	F010321	GGAG	MTFEELQLNELERYNNALVSQSLQPEDIKQMNRKMFNPKTGELQLLVDNGKGGVKMAAVNIFE*
Ga0114973_1000964714	F020497	N/A	MDKLIKLESINVWAGPLGVMPSDENNLPILEESRSWTSLENEWFANLSAEDKELVNEIINKNK*
Ga0114973_1000964716	F019827	N/A	MRDVLIGTKRKPYSSSRVRKMRSERLLTKAKKEGVTNDQVQHYLGKLQAAGHMRLGGMTSFDVKSERSPNELSENHINTTTIRFNTVVEKGMGEKPHMVGYLTSASDVDSKYKLKGWFNEDGTFRIELVN*
Ga0114973_1000964718	F012573	N/A	MSNQTNGWMEKLAKSYKLPEEQPKEKKQPVSLLKESQLHIIMGRDKKDLVKKK*
Ga0114973_100096474	F028170	N/A	MALKKLMKGLESSLKKEREIHPSTKLGVWFHNFKMRSIEYRINDIKKELSNRKTKK*
Ga0114973_100096478	F003626	N/A	MKEWISKYQKAIVGTGAVAVLVVCYFQQKELTKLRGEQKIEVLVGGDIEKANLIDSLHDELFNAKVEAGRYELSLEHLYEVNPKAGKQFQDYMEHETE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10009647

Overview

Ecosystem & Geography

Associated Families

Sequences