Basic Information | |
---|---|
Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10009628 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6312 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010028 | Metagenome / Metatranscriptome | 309 | Y |
F058086 | Metagenome | 135 | N |
F069861 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114973_100096282 | F069861 | AGCAGG | MKRHYTGNKDGAAKGLRPGMKVFIEEVIKLGNGAFWNNGDFGVRMMRGSETSMSVHATGRAVDFSYRNMGKGKGVPNGRREAVAMCKLLVENADLLGLEALFDYFPAPWGRAWMCDRDAWSNYKKETIHGAPKGDWLHAEISPEMADSPAKVREAFAKLVHPVVEESKPASE* |
Ga0114973_100096285 | F058086 | AGAAGG | MKDNRWDIPATQQYNFKNDLQFGKKGEQITKDFLEAISTGSFEVKTDRYRNGRMVVETQQNPRDTGWKPSGVDVTLADWWVYVYALDGSLMVIKVERLKRYIQTLSDKRLKTFAPMSNNPTKGFLLLPEEVMNMMTNPIYDMPGAEQ* |
Ga0114973_100096289 | F010028 | N/A | KGFGRKHDVPLLVLHQTSRHAGADGRKPTMSSGAFGGEQQATAILGVRRRKYEIQTEINELIEKLNKGGSERSQERLEFLRYEAKIHEHTVTVNLLKNKRPAGQLVDDVDFELNAMTGRIRELNGELPRQYKQMGLEYEHPYD* |
⦗Top⦘ |