Scaffold Ga0114973_10009611

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10009611
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6318
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F011393	Metagenome / Metatranscriptome	291	Y
F013298	Metagenome / Metatranscriptome	272	Y
F017485	Metagenome	240	Y
F027416	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000961111	F000785	N/A	MRVTNKTGMKFDCKRLMRFAEEKLGVSKCTAIAFTWESGEDSMGWYDWDETIWINLAQCKRMITVQKTILHEWTHAQQTFRWYNHYNLKYGYKNNPYEIEARENEKLVKRAYKKSK*
Ga0114973_1000961112	F011393	N/A	MPKGEQIANNRCEHCNIQLHTNESGEYYPVINRMDKQTLIRGEYIPIGNTFQYPKNWGKRKGAMILLETRIEDKRKQLIEAEIELAKLSACLEQVKEWDPNTLY*
Ga0114973_1000961113	F013298	N/A	MNIILNPLNNPNMNIREFYVKNYPSDDMGDGINPNATFDGLWEIINKYGLIKDVYDYLYVYDTLIRERVFEKLAANKGCEYDVIYYQWLKNTAL*
Ga0114973_100096114	F027416	N/A	MLTIENIQKLKGLKVGANGKVWKILRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGDYHIHSSKSNIKIAVERQDMVDVYNFLRLIKKEIERAVC*
Ga0114973_100096116	F017485	N/A	MNNELKTKDILEGITFILMIVATIGMFCLLYEVKELRELTKGVSNLQTIRK*