Scaffold Ga0114973_10009306

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10009306
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6425
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003962	Metagenome / Metatranscriptome	459	Y
F073257	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100093062	F003962	N/A	VVLNQDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFEGHQKALQSLHDACPSVWDTDEVDDES*
Ga0114973_100093066	F073257	GAG	MKDTEGTKHKFYYGEETYTICVTKDDWWLEDGPSDMSELMMKCGEEFALDHGMMPPEGLCVECWKGKYLDVVEDYHIGGTTIKDLDLRRCYRCKHTVLPWQSADRVDKVLEALKKPAELCPTCRKSNTIEFTGDLKMDSVCKLNGEPFTALNITRTQCPKCKDEFFTMSECEKIEAAIQAEQKRRGLN*
Ga0114973_100093069	F002826	N/A	MQVESKARLKWAREILSIARNKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVVGEE*