NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10009239

Scaffold Ga0114973_10009239


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10009239 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6455
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F008494Metagenome / Metatranscriptome332N
F008552Metagenome331Y
F033803Metagenome176N
F071239Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1000923910F071239AGGLKKIHLSNFRKKFDDKSYQAVKDAIGKNAFLANEININKIIDSITDPVIKKNFVKWSDGYDFAILN*
Ga0114973_100092392F008494N/ALSNIFILLAHHIHDDIISHQTKESEMTKKEVINLFMSAVGQYTSAIDKTAESNIQFKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIVAKREAEYLLETARANESRIKAEVDQMKYIIRALEAKEEA*
Ga0114973_100092394F001561GGAGMQTLEQKIKYLKKTIETLWHGVSETKEGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAINKQDTVWLFQAEKFAKRYLSLNPNGYRAYEYLGQFYRIMYVDLKLAIRYYESAIRWKDAPKSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYTKSKLEVLTKL*
Ga0114973_100092396F008552N/AMSVMIISFEASASEDTTLFGYFSMEYDPEFFSDIKENLTDIPKNKPLAFKLDTDNVKLLQGAFHTIRRIICVPDIEQQKFTYVFNRNFKSGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDVRFIDTIQNQFIKHQENMVN*
Ga0114973_100092398F033803N/AMTINLRKNIARFIYIIDQTTNVESRAKILKELDLTENEFQELVVNLLKFSNSNNREFYCCNPEYHGFIETFKIISEKTNTEFLI*
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