Scaffold Ga0114973_10008525

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10008525
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6747
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F032282	Metagenome	180	Y
F059972	Metagenome	133	Y
F076068	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100085253	F004696	N/A	MDYAIMKLKQDEIVLMKKIKGLQDGKPKWAAAEQLDEIRSAIELLERYNNITEQDIQDEDNYLKQVFATNPAKAKA*
Ga0114973_100085254	F032282	N/A	MNSNSIIDSIDIEKYNTIEKEREKIMGDEKFIQWCKDMNIGVRVEVKDYRAIDMNTQYSHNYPKWVQQKF*
Ga0114973_100085255	F059972	GAG	MKLKELLLQVYEGHCERLPDEDDETYLTRCGNDMFNQQFGISQLSNVPNVMKKKIVIPIPIKKN*
Ga0114973_100085256	F076068	N/A	VIKEQVYNQVADLFQTSIGVAHIIGFKTKREQIKEDGMESFKTIEPNLEINAIVCDVIEMGKYQELQRELYKIRQRGDKRLKELTIYRRAFDEIITKNENYITESGQIF*