Scaffold Ga0114973_10008136

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10008136
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6930
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F012435	Metagenome / Metatranscriptome	280	Y
F041079	Metagenome / Metatranscriptome	160	Y
F047558	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100081363	F047558	GGA	MVTKKAPAKVAPVKRTTPKVEASKPEVKKDDSTIGKIIGLIEWVDNPFKLFTVILLSFIAFSGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAERLKKDLEAETVLVHKVALVVNSRITLLAYGPKGRETTLDGYNSTLFGKDAARNSAVIAMMNGEVYCDKLVATGKTSEWEEKQGVNFICRGSIPPEMGAFEGYVSVGFTKEPQDLGAVKTRINLASTEMAK*
Ga0114973_100081364	F001538	GAG	MIESIKLFPTVVASGYPDQHDLAQKKLEKQEEVNKTLELAKKKQVQLQDIGFEIYCKKVTQERIRLEIFNNRKLDIYV*
Ga0114973_100081365	F041079	GAG	MLAWLDNNAKYCKTTDYVVLWNNLSEWAGTSDSTWIREKVIHGYKEAQEREK*
Ga0114973_100081366	F012435	N/A	MSDIDLVQYGVLQQKVDSMEAKIDKMEAQLDTLIELANKGRGGFWMGMTFVSAISTVMGYFSHHWTK*