Scaffold Ga0114973_10007196

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10007196
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7419
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010821	Metagenome	298	Y
F013503	Metagenome	270	Y
F029367	Metagenome	188	N
F031035	Metagenome	183	Y
F034802	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000719612	F013503	AGAAGG	MALTNFRNNVKQESGFDEEQRLMCSYPGCHKRWTIHVSGDKPKCSEHQWGKDKTTYSHPTIEKSVTQTVQQWYDKEQF*
Ga0114973_1000719614	F034802	N/A	MGINMTKTEAHELLTARRGGLSVLPPAIDYALFLTGDLGRNALEFGEGMDSTIQEEDQGSWQNKGNNMVALAGRYYGSQAWFDVHYGIKEADE*
Ga0114973_1000719622	F031035	GGA	MNKDLINLRIQDLISKGKELEQQIHQINGALQQCQWTLSELEKSDATQEVSDTQSV*
Ga0114973_100071968	F029367	AGGA	MKAEHSEFDCMVCEHPDAPGVDLECYFDSQTDNLWFVYIGDALITDLLRDTVIQSLERGYVKACKEQAENDKLDYALARYESKHYEV*
Ga0114973_100071969	F010821	AGGAGG	MTDFTFSPADFNATEILVVANTTEAKEYLAERYGSGCVSFSIRKSGAPDLADSFEFQGLSYS*