Scaffold Ga0114973_10007172

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10007172
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7428
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F035218	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000717210	F005584	AGGAGG	MAGTISTSYFATDLSYMIQDLYQSVTGLASSAVSASVTDLATSSQLDIGGEVFNITQSLVVLASSISAPTIGSLCTVSGTERMIGGFSQSTDGLSYTIELAEITT*
Ga0114973_1000717211	F008741	AGGA	VEKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFPQYHSVFDLVSYVKSGNKGNVLDLEIWPKKYEAYRKSKRSWTDFVYSHPEIKAADKTSIILDKLDDKPAVGLPENYNLVAAFGNSQGFYRNPLELITKARNDLGKDNFYVMTPPEIQIQGLSTYTAPSVSEMAKAIRGAKDFWAINSTPIVLASVVRRGKPTALFPQKNEWETDNIFDFDGMFRMD*
Ga0114973_1000717213	F003049	N/A	MKNAKQIIGCRKSKKGEDTKGLGMIKFGKSQPCKTKYVKVDITYDDKAKKELFEAGMLALKYDPEAVIEYVIKKALCELVKK*
Ga0114973_100071723	F006138	GAGG	MPATTVGQAGLVFGLTAETIGLVQSFSETRNIEKNEVRDASGNITGIGYYNPTTAYSLSVAITGANTSLTVGGAFSTLANATTVGNVRIDSLTINKSNSAFVTLDISATGYPNVS*
Ga0114973_100071726	F035218	AGGAG	MPLTKNPSNIDNFLFASGRMKMYRVGLAGSYTKVTGTGGVASIGNTGGFNINLNAGSAANGTSKAGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGVEFALQSSVIQARLIGYNASYLTPTSYTTLTNGFGLASSDNRFFGVVIESDGAGNIYLYRADSQTNPAINIGQTPLLTLTGGPTNDTSTNRFGPEIHCSNSSSTPSATPSAILQSTHWLLDVQ*
Ga0114973_100071728	F009142	N/A	MNNSVQINVEDAIAGLLASISGLNIYKTNRIGTKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSETQPLFTKIQNNIIDTKVYTARITGQTPTIKTAKRAWQRGLKINLICTPSELDDGLRYLDFHEKRNSMYVGVI*