Scaffold Ga0114973_10007043

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10007043
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7511
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049582	Metagenome / Metatranscriptome	146	Y
F053831	Metagenome / Metatranscriptome	140	N
F060634	Metagenome	132	N
F062703	Metagenome / Metatranscriptome	130	N
F063331	Metagenome / Metatranscriptome	129	Y
F066729	Metagenome / Metatranscriptome	126	N
F074804	Metagenome / Metatranscriptome	119	Y
F080943	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000704312	F053831	GAG	MNHWQKLEYRGDGFQPFSIRLDYCHEDIAFRDMYAFDDDEEYITKTEKEIEEGYRYFVILRAKVYLAGVEVGSHSLGGLLFDSTEQMESMMKLDFEGIISEAVVNAKHNLRQMSEAMNGVTV*
Ga0114973_1000704313	F063331	GGAG	MTELDHFALLNDLKSVLDLIDNDELETARTELKDVIDRVQADCDEKHRIYLERVERYLGHVDSALEDKK*
Ga0114973_1000704314	F062703	GGAGG	MLKKKIDNSNKTGIMVAYIDPSQNVVAVEPGWNMTPVVLAKLLKDLYPNKQDAIELVDSAVLVPVFRKEDYEYLDGFGGVLESNLNFYEHNLRPHIGHLFCHMTGVWKYSDDGIYWDPISEVFKDNSGFHFSEVRDAVEAA*
Ga0114973_1000704316	F060634	N/A	MIDFIVGFFAVMVFLAFYAYIGYWFLDLKTLPAEHWVSRSVTQIRIFFNDILEPMKWKTRRLDIRILLMLDKLVIRLTNTDYLLLLKKLWAGLVIVYLKTVLFALKLKRLFFEKNENKG*
Ga0114973_1000704322	F080943	AGGAG	MITEATKERLRELEGQKITLEDELERLSYTNNFVRIAHIEQELFDVKDSIKKITQNHWFEDISREELQKEESTLQ*
Ga0114973_100070433	F049582	GGAGG	MFEDHKEIHQVLADRFGNEDDLTISMMRRAISDLGIENPEALDVIYESVMFYTGDWPESEGWGSSDSAICVRSVKESLISNGYLKAVA*
Ga0114973_100070435	F066729	GGAGG	MTIKVPNNSLWQYIERDHIDSNIKKTIWEEFVLSHQDEFAERVSELAQEMWSNYNTGAE*
Ga0114973_100070436	F074804	GGAG	MIDDRLSDQRDEFFLDIQKGDLVFLQADDGSEIAGIAQERSIMGWMLEGGVEVTEYDNYLGHVSRNQLTGIAA*