Scaffold Ga0114973_10006816

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10006816
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7654
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (33.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F048101	Metagenome / Metatranscriptome	148	N
F048121	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100068161	F030670	N/A	KQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDGKRIN*
Ga0114973_1000681619	F016774	N/A	MPPKKNKISFSTEHIASLNHWRDQLLALEKSYHSKDPEKERTIRNMLNKYLDDVLDYNKNIKEKPKNKV*
Ga0114973_1000681622	F048121	N/A	MNTTNTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVSVSVK*
Ga0114973_1000681623	F082109	N/A	MWTPIEIFCLTFLFNHSPMANERLSVKEVIENREAQLLIESVSLRNEIQNN*
Ga0114973_1000681624	F062446	N/A	MKSKTIRIIGFILYCLFWMAMAYLFIGCSSVSQVGKNEGWFPNGMSEDAQDYPTKYNTMDSPDGRRNPNAQVRIFGVTY*
Ga0114973_1000681627	F048101	AGAAG	MKKFKNIKEFLETCSEDEKEYVYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRK
Ga0114973_100068165	F027756	GAG	MKLKDLIDRKILYLNFPINRYAVQEGKVTEISPSEKCIKINADWHLISNIRIIELFSEKERPTLGFN*
Ga0114973_100068167	F036564	GGAG	MKLGRISVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLGNWIRVSEDKNATEDMIPEFLLDKEND*
Ga0114973_100068168	F064403	GGA	MINPRAKILSDLKRAYLKEHPISLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF*
Ga0114973_100068169	F044916	N/A	MGSKKVEKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKTSLEILYKENPNLFADHAKLKLNKK*