Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10006324 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10006324 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7988
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (81.82%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7988

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (81.82%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F038244	Metagenome	166	Y
F065533	Metagenome	127	Y
F075840	Metagenome / Metatranscriptome	118	Y
F095129	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000632421	F065533	AGGA	MSTQINLEMVDLDSTAAAFLTAYIEAKAKMKEWSEKADIARQQVEAAMGDCEVGLVNGREAVRWTTVESNRIDTKKIRELLPPEMVAAIEVTTIARRFSIVDED*
Ga0114973_100063243	F038244	AGGAG	MPISSAQVTVTTAATLLVAADASAEQVNFHSSSGTIYLGDANVTSSTGYRMDNGDKIVLQNHETAIYGITSTGSATMSVLVITK*
Ga0114973_100063244	F001937	N/A	MNSDVATIIYSYFFVTAAVLAGIGVIAKHTIRTHTDELKDQLSRITYALYNEGQTGLINKVDQLIENQNLIKIDVEVMKARAESKPRTRAK*
Ga0114973_100063246	F075840	AGG	MMKFNNKVLEMWGKWFVGNAMTAVVIIGKSPLDFSAHDWKQAANAIWLSVVPVVIAWANPKHELTITKAKG*
Ga0114973_100063247	F095129	GGA	LNIQGLTLNPESKQAAALLAEKTFERYRNNPGHYRNTANSHLVGHLGEFAAFIWLRDNGFEPEAAFSDPDKDKEADISTNVGRIEVKTWSERYWEQWGRCVSVSQYASIKRKADFIFWLSVDEVDSETPKVAFRGWCEVGIFEGMSPIMTGDPGREVRNYQLHPSQLKPVEEMEKLHGSRRDLERGNSPDNGRSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10006324

Overview

Ecosystem & Geography

Associated Families

Sequences