Scaffold Ga0114973_10006233

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10006233
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8049
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F035763	Metagenome / Metatranscriptome	171	N
F038230	Metagenome	166	N
F041020	Metagenome / Metatranscriptome	160	Y
F045094	Metagenome / Metatranscriptome	153	N
F051874	Metagenome / Metatranscriptome	143	Y
F054865	Metagenome / Metatranscriptome	139	N
F080903	Metagenome / Metatranscriptome	114	Y
F090393	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100062331	F035763	N/A	SRQAYHDFISNDPVFKREKISDKKEKAEPSETYLCFSAFASTYERLAGVTYPSDKGNFIMTAKDGANCKKLVTWLKKVSASEQAADEMVTMFTTAAWKISDKWLKANFTISNIYSQANNIYTKFMYNNPAAQEKRRQEEIDRLVNEYQP*
Ga0114973_1000623311	F090393	N/A	MALDRKTSCRVSFYDYEQEQIQSWSITGSARLALLVNTISHEKNKIETNKDEFQSSLDYLIYDLKKFLNTPYTPEENA*
Ga0114973_1000623313	F002778	N/A	VKEYNAQMMEIKAFCDEVNAWITTAPSGEDLDSCDEYLRQLSAYYSRYTVISGMNESIYSQLLMICIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSENYRTLLSSFRQERILVGHMTT*
Ga0114973_1000623314	F080903	N/A	MYNTLLERQAYDAKDDIKFVIDNLIAEIHELEEALEKLENKIEELEEIIEGLKAEWHDLKNK*
Ga0114973_1000623317	F054865	N/A	MVLMEVKTNRFIIKYKEGIVSVAANNVTEAIERFKELRIETSTKEITIVPANEMYKRREEIFGK*
Ga0114973_1000623318	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIIFTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSDKRSKYPPRVAAVATVIALLELWFSIQGKSIGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRKRNPPKSKESALKMNATTSQPIKFTMAICFMFVVYVLPAQKNHFMAYNYMSIEKIGGDKLERTFYDTNEEQHYIDTITTDFLTSWNFWDGYSRSHLDNDLFMTYGTQTMKYIKSKQLWYYRGRYYDYKNLLKFLVKYSKKNFVNKKIQW*
Ga0114973_100062333	F041020	N/A	MKQTPKQKAKELFDHYYIIIQNVGGELGNEILVSILAEQCALFFAMQMQQEKWDEKKYKDHEYWDEVEVEIVNIGMYAM*
Ga0114973_100062334	F038230	GGA	MQCKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSREQRQKYIEYQRSYHKLKQFTNEQFNPVPTTQL*
Ga0114973_100062335	F003786	N/A	MYGIDGDLAFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEIAALRYNVQMEERGRLEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRQLWEEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK*
Ga0114973_100062336	F051874	N/A	MTTLQLIEQKIEISLQAINNLLPEGYYTTNTISSTDFGNSGYILVKKVDAIDYVVDICKIRISDHYATNRGRQDTEIMIDLVRFNIEQLISLVDRKINPSNYEQIEIRTLTNDILESNFGIGKKPFTTLSEPTFLGEITTKKGNIAHKYSWLKEDVRYSWIKKAN*
Ga0114973_100062337	F045094	N/A	MDDYKIKGTTEEDVDKAINRIFRFELLDDAQQVLFVEIMNEALDVPWIAEQLTGIWDRYNQEIYDCQKEDSYENH*
Ga0114973_100062338	F019647	AGAAG	MKITKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQAITLIDDNGKYKVLEESQTMPAPTRVAVIEQQIAEKPDLAAIVFEMSAIYTQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR*