NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10006140

Scaffold Ga0114973_10006140


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10006140 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8098
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034068Metagenome / Metatranscriptome175Y
F047485Metagenome149N
F048853Metagenome147Y
F097311Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1000614011F034068AGGAGMQIKAIKREKDIDYERLYQAYEGLIDWIGRNEVDGQETLGLLVKAAMSLAVTNNLPKDDVLEVVAVTYEMERSMRPRADEVH*
Ga0114973_100061403F048853AGGAGMTIKQTITSFKLSATWSDGKTEGLASHLPEYLYDQLQDYFRELEDLREEHDNDLRDEEYQFGEDESKTVNV*
Ga0114973_100061405F047485N/ALRRMIMQGLDDHYSALWVANERRPTVQTEKYTITVAVEGFVQIDVEATSRSKAVDQAMEIFNDSSINIVVTDKSIADVEEWK*
Ga0114973_100061407F097311AGGAGGMTDKERIIYLTAALKNLTLSADRYIDDGSWIEHLSLDVEFAKGVLKATKYSKEERSIRDAVGRSIKGEKA*

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