Scaffold Ga0114973_10006140

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10006140
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8098
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F047485	Metagenome	149	N
F048853	Metagenome	147	Y
F097311	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000614011	F034068	AGGAG	MQIKAIKREKDIDYERLYQAYEGLIDWIGRNEVDGQETLGLLVKAAMSLAVTNNLPKDDVLEVVAVTYEMERSMRPRADEVH*
Ga0114973_100061403	F048853	AGGAG	MTIKQTITSFKLSATWSDGKTEGLASHLPEYLYDQLQDYFRELEDLREEHDNDLRDEEYQFGEDESKTVNV*
Ga0114973_100061405	F047485	N/A	LRRMIMQGLDDHYSALWVANERRPTVQTEKYTITVAVEGFVQIDVEATSRSKAVDQAMEIFNDSSINIVVTDKSIADVEEWK*
Ga0114973_100061407	F097311	AGGAGG	MTDKERIIYLTAALKNLTLSADRYIDDGSWIEHLSLDVEFAKGVLKATKYSKEERSIRDAVGRSIKGEKA*