Scaffold Ga0114973_10004972

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10004972
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9134
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015591	Metagenome / Metatranscriptome	253	N
F021520	Metagenome / Metatranscriptome	218	N
F026250	Metagenome / Metatranscriptome	198	Y
F030424	Metagenome	185	N
F041731	Metagenome	159	N
F048951	Metagenome / Metatranscriptome	147	N
F064670	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000497210	F030424	AGGAGG	MIDVNQFAELELRVNDLQNALARVIEERDNYKDTADSLFRELESCRATLTQANSDISRLRIYLAQGAEL*
Ga0114973_1000497212	F064670	GGA	MNPMILSDKVAGIIKDLEVQVGIKDIALSSAMRRIEDLKSEVYELTNTVEELREVIRDIVTR*
Ga0114973_1000497214	F015591	N/A	VRYQRSRYAEISQTTLTSNYEDPIAEFIEASAEGLCTGYVVIANIERINGDQSFWVTTLRNQTASTSLGLLESASAAEKYRIARSFNNRYDEDEDE*
Ga0114973_1000497215	F048951	AGGAGG	MKTKTRKNNGYNYPASALLKLFPEDTWASTIGEHLGVGRAAIQTWREGNTYLDQWRADKYACLLGRHPSEIWSNWFDEVELAS*
Ga0114973_100049722	F021520	GAGG	MSHNEMRTMVVVRWHDAHSATDTWTPIDDIGTDPCEVVSCGFLLPTSDGGKEDHITIFQSKTDADDVDGVLCIPVAMVQDMKVMTKNIPGLAPSK*
Ga0114973_100049724	F026250	N/A	MNDPKEGIMTNRQKQIGTVIGMGILWGFWLMPTAEDLPDAQPATPLEWKLFIALNFAAIIYLHILNVREHQLQIRKEAQQRYWERMETRSRNNHPTAK*
Ga0114973_100049727	F041731	N/A	MNSIEGRDLDQTGDEQAVTYIRERLNSIQGADRARMAMLITQAELAGRSISLKETKSLRRFEIARGLFLLFDSGQFDEDLVKDICSQITSQKYTKPGEALANLDVKQAQRFANACHGIARDLLNLIYIPETNQFHIEEQAS*