Scaffold Ga0114973_10004871

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10004871
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9226
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064669	Metagenome / Metatranscriptome	128	N
F074804	Metagenome / Metatranscriptome	119	Y
F082597	Metagenome / Metatranscriptome	113	N
F099193	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000487119	F099193	GGAGG	MYIMMDESRLKREFTEENLTAWAEYRAECHRANYYFKRDGWSEGTLWDWNPEQKQCTLQLRWGDDQNNQENYCHYEDLDEQEYLRQYDEYVLSVKLTDFVS*
Ga0114973_1000487120	F064669	AGGAG	MANITRALHPVEQWVQHITKTTPDLILGTLQHADLEMAQQLSNQMQLRGLSMQDIERLKNRKQPVSTT*
Ga0114973_100048716	F074804	AGGAG	MMIDDNLYNQRDEFFLDIQKGDLVFCQADDGSEIAGIAVERSIMGWMLEGGVEVTEYDNYLGHVSLTQLTGVAA*
Ga0114973_100048718	F082597	AGG	MSLSTYWHDLIEFKTEHAPFEVKVDYTYEEEPLESLFPEESAEWYKETARKVERSDMPYVVVRAKVFLDGVQLADNNLGGMLFDSWEELELSMTQDDHGLIAETVQEARDQWDRLQQLMSTQPKAVA*