Scaffold Ga0114973_10004558

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10004558
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9587
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F012455	Metagenome / Metatranscriptome	280	Y
F014142	Metagenome / Metatranscriptome	265	Y
F017133	Metagenome / Metatranscriptome	242	Y
F056558	Metagenome / Metatranscriptome	137	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100045581	F012455	GGA	MLKEIKNKVIRIQELRRSNAATPITNKKKYTRKVKHKNKLQ*
Ga0114973_1000455810	F014142	AGG	MISLNEITVVAEPTHPMSSSNTKNNNIFRLANGNYISRMAYVYMVASENLISHKYLSPNESKWVFANKVGN*
Ga0114973_1000455812	F093845	AGGAG	MKVTLTSTSGATKEMSFDTKEHLLEFITLYKATLHQGQAVCIDAPLVGIHSGWIQGTKV*
Ga0114973_1000455813	F056558	N/A	MDIMGILDNLENAWDPEFQFESTPIFDKDNMGREIFWNDLGRPENDGLALKMFKEECCDNCTCSTNA*
Ga0114973_100045588	F017133	GAG	MSIWTKFATVNDYPKGLMNLCPCGQVVLAPAMYHEGFPWWENPNKCKELFEGVTK*
Ga0114973_100045589	F003965	AGGTGG	MTTLEITKCVEHTPNKSAISEYADTQFTFCESCENNIERWYNDTDPERLPMWTEWKVSK*