Scaffold Ga0114973_10003984

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10003984
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10327
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031407	Metagenome / Metatranscriptome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F060725	Metagenome	132	N
F064518	Metagenome	128	N
F090088	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000398410	F034112	AGGAG	MVIFNIGNKQNKYNYPETASDITLEQYIYFAKFLLPQHPKVEIEAIQYMNDRDAVYQKILPYAKKLKVKVTGFEQLYVILKLEYTLEQEEVKDNVRRFLPPLMIQWRTNDEQLNQRLEIMDEVWEANVRYPYMAKVVNYFTGIPLDACFGKVADSLELKYLFYIYTKIMNAINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPEGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYMLDLQTSMLERAMENLN*
Ga0114973_1000398411	F031407	N/A	MTDKEKALIIIDLIEKITQEIIDKPLQRKRLLQMRGHLEKAVKLTGNGIKREWSRPPSLPLVSHDKAEPVPFKQSTTETNGDLLADNIPVVTKKARRK*
Ga0114973_100039842	F090088	AGG	MEDKEALGKKVFLEFYSTFILDDEIEETGRVFYLAQKASMVHLNLIRGILQNDEYIINMAYLKDVINKIKI*
Ga0114973_100039843	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFLASNFKISLIGNNADWFADVGNTLVRDLGWSTIEVSETTVKANYNPVTAEYCFILMKWKAWENETYILYNELTPAIFIWQILEKAFKDKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPSPSTFTKSAGENGTVNITFTDETTSPNFDTGGNYTGGVYTVPINALYELIAELNVTLTATIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSISLEFLGDLVIDDVVKLRLRYENVSFNLSIAGSLSVVAEKEGLETGETVNLQYIIPISWYVRDIISDLTTIFNLAWETDVLNRQVYAYPKDDYTIRYRANSTGAASITTFDGFFKGSNKYDLNIRDVEGSDFQVFDGYKSTQVLAYATDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGIEFIYTNFFAKAIHINDVAITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGKIRLFDETTSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYSTFVKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNILVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIISGSTIEINVNTHYDGANYEVVINGVTKG*
Ga0114973_100039849	F064518	GAG	LFNLTGFTPMESAEKAKLYQVFQYLASKAAEDKMVEDLSKQKK*