Scaffold Ga0114973_10002933

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10002933
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12222
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (38.10%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F009147	Metagenome / Metatranscriptome	322	N
F009398	Metagenome / Metatranscriptome	318	N
F017997	Metagenome / Metatranscriptome	237	Y
F032255	Metagenome / Metatranscriptome	180	N
F038227	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000293311	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGGYYNLELGAKTK*
Ga0114973_1000293312	F005024	GGGGG	VKFGVNMTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRIGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNRGFSQFQSPKWKPLSKPPGYKAPKQTNAALVSLANQYGLPQENVATHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVAGIYNTAMQKAFDDETTEMVNHMTEALLANGKVLEDNGITIK*
Ga0114973_1000293313	F006107	GGA	MNAAALRAELAIADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEIEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDAGASALNAPSNDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI*
Ga0114973_1000293314	F032255	N/A	MANSQGLAYQFGSPASVTMFDTDNSTSIFTALASIESYDLTHEADTEEVRNSAGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVGITGAPVIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTAAAVALNV*
Ga0114973_100029332	F005633	AGG	MRIATTIAVDKAGKSKIVAGPEVDAAAQRTDFNTAKIAEGSKLILWIQGSIAPKIRKG*
Ga0114973_100029333	F009147	N/A	MAVQADISTEYSMGREGFALVTSTAAQTGNWAGLIPTEPTVFTSITGFGISGTWTSKTIPAGFPLVGNITGFQISSGSVVAFLARS*
Ga0114973_100029334	F038227	N/A	MISIGIALNRLFSGQAGGTDAPVLRRDVLREDEGFLWQEDGTSKLVITLGTFDYLLREDSGFLQQEDLLKLAIQSN*
Ga0114973_100029339	F017997	AGAAG	MNVIEQIVTAILKWLTGLAKTQPTAEDAKPDPDLKQKLLDRIDKSGV*