Scaffold Ga0114973_10002745

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10002745
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12622
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078162	Metagenome	116	N
F098564	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100027452	F098564	AGCAG	LLENPATKGFKYELWQGSTLFLITPVLGKATEVARTTDAILKWLGAAPGFNIYIWFRNDPREIKANQWPTKAQVNGGWTTVGTPNIVIYRSEEWERVLIHEMIHAMKWDWEVGPTPAPCWKMNKTDKLNPHLFEAWTELYAEWLACAWYGKLWDKQRKWQDLQATQLLARATHKWEENTSVFAYYVLKAALAPHFEFLWVFGQGKTPEEKQYVMCGLVTPELTRLRNLAKTTVPQDMSMRMSVPDKT*
Ga0114973_100027455	F078162	N/A	MFGVPERRADGNSVYFYVPMASPTRLGVRLRMNSKLTVLPEASVQHKFDKLEQTVLVELTKTETLFKNKPSYDSLQRITPRWGIVYDKDDKPHWSEYTEKEFFFDVKEGAYTNSIVDLELIGILITRSTISPKFAVKFVEPDTKTDVIDFDWQTPAIPAKEIEEVNDLEAATDAKTLTLRSPALIAKEKADAKEQVKVLFRTADEARQTALSAMANFFGKYEVSDDESQFSDWVTDDDESTNSEA*