Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10002727 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10002727 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12670
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12670

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F012435	Metagenome / Metatranscriptome	280	Y
F017968	Metagenome	237	Y
F029105	Metagenome	189	Y
F047558	Metagenome	149	N
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000272716	F029105	AGGA	MIDTKLHYYFDDVVSYDNGQTVENVKVGYDYYNAEDNYPYDYDSAEIFDVFVFDKQGNHITYDIPQDEYKRIMQEAKADFAQIQKDRNEI*
Ga0114973_1000272720	F017968	GGAGG	MKQTEFLTEPEKANNLATLSSQERLNLRETMRQTEALEWIRRFKKKALEEGGGEAQYWWQQTLADIAKRRGQPAADDLRQRMNRIKNETSRKS*
Ga0114973_100027273	F012435	N/A	MSDIDLVKYGVLWQKVESMEAKIDKMEVQLDTLIELANKGRGGFWMGMTFVSAISTVMGYFSHHWTK*
Ga0114973_100027275	F001538	GAG	MIESIKLFPTVQASGYPDQHDLAQKKLEKQEEVNKTLELAKKKQVQLQDIGFEIYCKKVTQERIRMEIFTNRKLDVYA*
Ga0114973_100027276	F047558	GGA	MVTKKSPAKVAPVKRRTPKPKVKIVSKPEAKKDDSTIGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAERLKKDLEAETVLVHKVALVVNSRVTLLAYGPKGREIALDGYNSTLFGKDATRNSAVIAMMNGEVYCDKLVASGKTSEWEEKQGVNFICRGSIPPEMGAFEGYVSVGFTKEPQDLGAVKTRINLASTEMAK*
Ga0114973_100027279	F065786	AGG	MTKDDLINLLRITGAQPTAIDAVCAAYDAGWNDALDDYAKRLEPLPFGKDTIDSFSVFIRSAKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10002727

Overview

Ecosystem & Geography

Associated Families

Sequences