NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114973_10002526

Scaffold Ga0114973_10002526


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10002526 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13213
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F001280Metagenome / Metatranscriptome732Y
F007921Metagenome / Metatranscriptome342Y
F021988Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1000252621F007921N/AMINWLVNRIFRWDSLRHAIFDEVRLYQSIDRSMWEHEKEGPTNLTWSEGDRWYGWTYNINSKRYYFDDIGNESLMGLWEDQWLMESDSLEKSIVNG*
Ga0114973_1000252631F000852GGAMTTKREYLKQQGITVGVRGRFSGAAKVVLDQAIAKGVTFTAEAPVKKAK*
Ga0114973_1000252632F000441GAGGMRMSDQYINDQLSKAQALLWSGSLHEVDEAHNIVSNLIRERVEQIDLE*
Ga0114973_1000252634F001019GAGGMTYEPSLEILEVEYSCSPGGIDMFEVYDKSDIPLDMPIYETENLTEAVLFCYNLGKDFTVKTLAEWNERELAYEA*
Ga0114973_100025267F001280GAGMCVECGCESVGSQTGIAPVTIVEASRDGDSGLTLSMSSTPEQTRQFINE*
Ga0114973_100025268F021988N/AMSSFQKEDGTGTTPPPNGAAAGAVTSNSATRKHPRQGLKTDINRHGIRRELNTNPRPPKKTGRKKI*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.