Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10002014 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10002014 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14911
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (74.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14911

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (74.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F041080	Metagenome / Metatranscriptome	160	Y
F091587	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000201415	F008808	AGCAGG	MSDDTEKCPECGEHFDNAFDAIDHILEDDEDFDPALILPNGYRLMIGSLLRCIYRYADEPEQIRKITQSTFLTLFTAETQPSVMKDVVEDMIIDSSMMNLDDELKKLLADGA*
Ga0114973_1000201417	F001515	N/A	MTNKSSFDLDFGFGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECYFKKIEGWGPSGLGVTEAAYWAFVLEESTLIVPTDVLRWCVSEFGRDITCNIPPNISKGFLITVDDLMSATRLYKKATSGLVKN*
Ga0114973_1000201418	F001531	AGAAGG	VDWSRIERWDYIVVNVASEYHRKFDMVELEDIKQSLYEWFIDHPNKLTEWEAIGHKDAKNLLYRSLRNQALDYCQRWKAKTVGYEKDDLFYYEPELVEALLPAILRVDYSITHKLNLGRTGKPTAPNEGGNLPVMMIEIDYAYWKLNAEDRKLLFFRHAEAMDFKEIANLLSLGTDDAARMRHKRAMRRLINKIGGFRPYRDEDTKDSTETEESPAIAPEE*
Ga0114973_1000201425	F041080	GAGG	MSTNATILSLAEEIRLIADEISYNAFDTTSEYPKRGTIVKALPEDQQDRFNPQSLWVSLGDGTYKHLNGKKGLVTTHSRLADVTSVVFEA*
Ga0114973_1000201431	F091587	AGGA	MSYNPYGGQGSIVVTPRKPQATPRRLGTRGARLTDTSHGKAIRRSRNGKVTSNKRVERILPVLDEATQERLARELLLAEREREFRATLPSVHIDAND*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10002014

Overview

Ecosystem & Geography

Associated Families

Sequences