Scaffold Ga0114973_10001067

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10001067
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20525
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F033329	Metagenome	177	N
F034061	Metagenome	175	N
F079784	Metagenome	115	N
F080863	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000106715	F079784	GAG	MRRKISKSRQMVDIVVKHWRSTIGSLVILSSVFALIFKAISTETLAAIVAAMIAAGYIPKANQDDN*
Ga0114973_1000106720	F024717	N/A	MATPKQVSERIDALFAEWSGGFTPLSRAVKNMRREMYIRIFGIDTGRGQNQAGNFLPTVPYTKAYAKIKAANGRPPLELTGFLKRSFATDEVSVFSEGFDSLIYLQADEAGKALGLEKGVDSLNPKYKKFKGYGTIFKPTVQEQNDMLQLHAELLAEDIANDISKP*
Ga0114973_1000106721	F034061	N/A	MCYEKLLGLKGCDRAEPTTGLYIDDLGINQTLLGQLKTDQYFSGVELFDDKLKFAWRKMSSDMLSRLSPMMKADTVIDSKRIGQVLTNASNIDLALGAGKYAGIRVTIDPNQLSFLNFYLSTLQIDIYTMATPVEIFVFDMTTQKLVDSFFYQSEAVEEFIGRTFKANRRKLDLAFVYESLYDTTKMITKKGSCYDCGGGIRSVHICPFVDAIGIELTTDGTSVLSSKSKKYTQGMSMVYNVNCDRESWLCSIGGLMAMPLAYATAVEIFNYGLQISPNQRVNTTVSVNNGFATSDPNDGMIAARDVAATRYNEELAAMLQNMRLPDDNNCFDCRKNMKYVTALP*
Ga0114973_100010673	F033329	N/A	MTRDHYNSIDAINASSIKRHYTGSIQFAVGALERGAEFHRNLLETEPSQMPSNARQVYSAIAKHPMLSIIFERSAKEITFIKNIEIDGELVAAKGILDIHCPEFQINADIKTTSCTNLRSFASDMVKHFNHIQAVWYSYLTGFPATNFYYIGVPNKFKGELFIYRHTQTEIDAAEQLIRDFLVLRRI*
Ga0114973_1000106732	F080863	N/A	ALKDIQPMIDELNQSGKDYISHTVGYHTIDKGRDFKAMQWAWADKIWAHYQLPADTIMPAINSSMQWIVKGEKAAAIYSKAQKLYFDNPIPLKDLRMKWGGSQPDELYMNIAMAILGVDPALKVYEKIKGSEGGMIHFAMTRDLTFQEITANYYLQSYYGGAGFTPNFYIDWLDRMLKADHQAIGKRHIYYINRISQNKFADGKR*