Scaffold Ga0114973_10000985

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000985
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21253
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (83.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F007741	Metagenome / Metatranscriptome	345	N
F041081	Metagenome	160	N
F058800	Metagenome	134	Y
F085343	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000098512	F085343	GAG	MLDSIWWILNSFHMKTIQILLMTVLASVALADDEEEINDFVGGVYKGSGTVHTAGNVIMTEEGLIFKSGSRFIYQDGRVCQHVGSTYIREDSSVVVRAGNAFVSNDGLTEKVGSTYIGNVNSFTAGSTIVRQSWASR*
Ga0114973_1000098518	F002009	AGG	VNAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL*
Ga0114973_1000098519	F041081	GAGG	MIMEDVGVDFEFNGKKYTAYGNAEIDTITEDIGPVGYREHYYAQVVNNVIMSKIEISTDTEYIKNPDKDLLEKADDALCRQAEEDFDAGK*
Ga0114973_1000098520	F058800	N/A	MKAALSWLFYCLGDMTSRTIMKIGIGYGLYKTLMLWSVDMDKKFDVWKEVKPNRRNKE*
Ga0114973_1000098521	F003304	GGAGG	MKRALVTQAFGDDWKKVLDLTRPRMEAYCKRHKIDFLALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDSDILIANDCDDMGAEVNMFCAFDEGAFLDRKYHMGKLASAFGAQIDPRFYVNTGVFVISSKAAGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPLQELDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMPKLIEQIKSDDAKLVELGR*
Ga0114973_1000098527	F004010	AGGAGG	MPLGKDVSKNMHELAMDNKKKGKERGAGGTPRSRKQMIAIALSAAGKSNKSPRKFRMRSGM*
Ga0114973_1000098528	F002826	GGA	MEIEAKDRLKWACDILLSARGKLAVERDRANHGHAIDIIQIIALVDAAALVCKEISESE*
Ga0114973_1000098530	F007741	GGAGG	MKLWTNQTNSIHKVDDNLLHVRNTYVIPDELTGGIWLDSIPCPHKIKPYYKGRSTGGATAVYRAGAIGDAVIATAFVNYLVQESGGIVDVYAPARNLPLYAGLGAKLYPLPCTLEAWDSYDAHLPTDDLFSGQVGETKLGTGPGNCYKRIYEWMGVW
Ga0114973_100009854	F000635	GAG	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTARLITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGVAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0114973_100009856	F002149	N/A	MTAIEYIEKSGVPEGMWHNLPEWFGWFEKQDMVGIVRDGDEIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLLERFGPRKRITFNRSGKPKEYDYMKFMRKALR*