Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000893 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000893 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22469
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (66.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22469

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (66.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036693	Metagenome / Metatranscriptome	169	Y
F068427	Metagenome / Metatranscriptome	124	Y
F070854	Metagenome / Metatranscriptome	122	N
F071976	Metagenome / Metatranscriptome	121	Y
F075702	Metagenome / Metatranscriptome	118	N
F086585	Metagenome	110	Y
F089836	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000089310	F086585	AGGA	MNDEQLIEISRGVDSYLSTLLVKYSVTPLSLAAILMARAMLLNKEAGSIEDFLKLLSSISQDPPMERNETKVH*
Ga0114973_1000089325	F089836	AGGA	MKTVAQMETEAILSMVESMKALEQQLADAKKRIETLETVIANQRAMINELQ*
Ga0114973_1000089326	F068427	GGAG	MNPKDYQMEIKKPLTFEEWKGNIAPQYQGEKLKAFDRLHNVDYKKEFEEMLKTEYAEYLSNLNGDWLLK*
Ga0114973_1000089359	F070854	AGGA	VKKFAILWLVFCVNCYADVSFGTGEAPDCDIAKAYAVSDAIERYAEKEFEVKKQHICRERNAEGIECDYVKKTEVESAGTLKRVITEKIKPKKSKFVDTCVVEVKVELEPSRPLAGDIENASNFAVNGQQYKFDVITREPLYVYLFSVYGDKMHIMYPYDGIKSNLIDGKLVLPNGIWWNADIINDAPESKDTLMVVFSKVKITFRSSMTRDEIYRQISSVPINARRVVYHNFVIKRRT*
Ga0114973_1000089368	F036693	N/A	MKPRDPVAKDLRTPKYRMRVVESKVQYIRQPKHRKADHGLGI*
Ga0114973_1000089369	F075702	AGGA	MIQIENLTEYQVEMLDHMWSLDSVEEYEEWYNLLDDEDQRLADTLQRMIILAEMDYLMGDCNDAKQLLKKFAL*
Ga0114973_1000089373	F071976	AGGA	MKYRVIVNGVSFYTSGAAIKRGVGDSVGVNAAVRQLFECMFNAVGVSSTMTVYDHKMNRTSYNVQISKV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000893

Overview

Ecosystem & Geography

Associated Families

Sequences