Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000814 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000814 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23366
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (73.68%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23366

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (73.68%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F036203	Metagenome	170	Y
F057363	Metagenome / Metatranscriptome	136	Y
F096619	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000081410	F006261	GAGG	MATISSGYTSSSPILVNNPLSWSFVAPDDDDIKVVGVSVQQPLSQTIVEAYGVFKPLGASKSVVVAQSIYGIDGTYEITVQGEDDWDELYPVLVYQGTLLVRDPLARLKYVRFVDRNWVESGNIDSLIRVVKVTYFEVDAP*
Ga0114973_1000081420	F036203	GAG	MAETQQPMSSNDAGNVTGSSSKVQRVHGVSDAQGVNPKINQDDFFKDLDSLVGSGRGQSGCSIGKLVADLDEPLRSKLNEIMRNEKVNSSRLGEVMLAYGLQVSSSDVLRRHRRRLIGKDGCKCPNES*
Ga0114973_1000081422	F019308	N/A	MAKSSFTLDLFGDQELVNALKAGAEDTPQAIAQAIYEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNTGYFVDIFYGGPAASYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIQKGHRN*
Ga0114973_1000081423	F008607	AGG	MDAIYTKVAEFLTDSVVFTAKASVDKYNKPTFSGDTTVTGRLIYGQTKSKDVQGQEVVDIGRFITNGPAATITVGHKMVVGADTFTINAIDKIKDENGAHHAVIRFGR*
Ga0114973_1000081434	F096619	AGGAG	MAINHAIVSVGSTATLLTVAASGGGKDGSTILIQNPAGGQAVFLGGAGVTSSSYGYKLAIDSNISIELNQDEAVYGVVASSTQSVAVLRQGV*
Ga0114973_100008147	F057363	AGGAG	MDSKIKAMLASYGRSFLAAVTTAFMITGGDILALDGDALKAILAAGVSAVLPVAIRAANPKDPAFGKIADGVTEAVVKKIKAKKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000814

Overview

Ecosystem & Geography

Associated Families

Sequences