Basic Information | |
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Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10000757 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24296 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (59.57%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015302 | Metagenome | 255 | Y |
F021920 | Metagenome / Metatranscriptome | 216 | Y |
F023777 | Metagenome / Metatranscriptome | 208 | Y |
F030333 | Metagenome | 185 | Y |
F034448 | Metagenome | 174 | Y |
F040990 | Metagenome | 160 | Y |
F050860 | Metagenome | 144 | Y |
F085063 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114973_1000075714 | F085063 | AGGAG | MKPRIASRGPEIDMEQCVRQVGGGRYDMVLIGAQRLRELKRIHREDTTRYVTCVDSLREIQAGQVSLVDYLAKVK* |
Ga0114973_1000075715 | F021920 | AGG | MAKPQQTASELSRTLAGQWTKSEKREYASRSIMESNQRTKAINKAVKQQHFMK* |
Ga0114973_1000075736 | F040990 | N/A | MNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSIRVWLENANGVYQVHPAWHGHRRVDPHEFTLVKLRAKTIKWWTGE* |
Ga0114973_1000075737 | F015302 | GGTGG | VSKDEYYSSTAARLDTIIGGDTTHFLRLQRVKNEYDALARDVPVGQGFLTFYDYVKEYYGVKLVYDGDDLKLEYAVIDERKYTVFLLKFGQ* |
Ga0114973_1000075738 | F034448 | N/A | MHVNNYTLPRPADSALDQCHTVYINDPAFRMWAMKKYCTENKLSLVWSELVETSDVSAYFDEACAFYFIDARDATMFSLKFK* |
Ga0114973_1000075740 | F030333 | AGGTGG | VAIDRNPELVIPVKTYTHYTECEPWCQVNIGVWNESWWKDYPDMAMAVVVEGPHEDCYWFSNERDALMFRLRFV* |
Ga0114973_1000075743 | F023777 | AGAAG | MAVKSWFLSVVDTATHKPVIHKMFFTAPEMNRFIKEQKIVEEYKKPEYYIVKENY* |
Ga0114973_100007577 | F050860 | GAG | MTDYKKLNDRIVRQAWEVSNLTLSEELKTQLFQDKIRRASEALKARENNPVYFQIED* |
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