Scaffold Ga0114973_10000619

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000619
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26912
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (39.13%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F040160	Metagenome	162	N
F058252	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000061910	F027487	N/A	MACFTALDYRNKSYPFVQTIAAAAGITPISYGCYDSATDAAKLYQFYVGLATIGELTPVTQNCFVQKTEDQQYYLTNEALAAALPPVG*
Ga0114973_1000061912	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRTITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDAAWFVPEHTLNNEAGYDLCALRVKMAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLAAFNEADPATWARLVRVPRYIKTVLENGCAYIPNRAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKSLYGSCCEVQSYIVPENNQDCYSCAGVGDIVVPS*
Ga0114973_1000061914	F040160	N/A	MTTEKVKSLCAAISSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGVFKKTKASAKHKEPADSTIDPDLDEI*
Ga0114973_1000061916	F021128	AGG	MKLKNKNLAPVGGWYWRYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYRSNGVELPNNIEQLVEDQTCQRQPSDRCWYSDGLGDKIAQAIHTVAAATDRVLGTKLEHKARGCSSCNKRRNALNSLS*
Ga0114973_1000061917	F023326	N/A	MSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGQYGRTYCIRQNINISDFKLLSPSEHFLNAVKLQWPTEVSIYNRGYTNTQLIRTLDELCSNVDICLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLYKCARVQIGKLIDYRHMIVWGGATNDEEKEYDNAIKALAFPSGNEGQKAVDTTRGRKNDRIRLALDELPEMEMGAITSKVNLGANDDVTFIGIGNPSAGDNPHTRWAMPKGCSNFDSVNPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEMMLKLCYGDENAIDYVRNAIGWWPKTGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVALCRTSGVQPSKFGMDVSGDGGRVGQAIIREWLRFDSMGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSAYHAFKSRVLFGVSPTSELARELCLRRYTIKNKKIAIETKDDLKGRTGYSPDLSDSLIYALEMARRNGLVFIGNDKPVPTNRFWARDEVSIDTIPDDDYGSDDNGDW*
Ga0114973_1000061918	F058252	N/A	MTTNNTFESRIICEGTEVSNTPEKILFRQKFNQCWVKKSDIRLNETLGHLDGEKIIRIVVPEEVANTLELEGILD*
Ga0114973_100006199	F017989	N/A	MALTQPCFTNLTPDQQNFNIYEQLKQVTGFDIPPYDRIDITYYGATNNIATVLYKNAGVLVATLTLEYATQPPTVNDTNLVKVTITYP*