Scaffold Ga0114973_10000563

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000563
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28299
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (81.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004477	Metagenome / Metatranscriptome	436	Y
F018701	Metagenome / Metatranscriptome	233	Y
F023846	Metagenome / Metatranscriptome	208	N
F028803	Metagenome / Metatranscriptome	190	N
F037059	Metagenome / Metatranscriptome	168	Y
F074883	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000056318	F018701	N/A	MKGVYMSAASDKYERDVAKNIDQIPGVKAERPSVGTDYPDVKLTYNNKKTWLEVKMSHTDNLSNPRMFYKNGKWQTTYKTPAAAAAVEILNKSPMTKKFIEEISKFSGIPMKDLKIPSSKTGLKEPGAVPLHIMKAYFSKPGINRYIANKENQDLGKVVTDHYTIGKTEPAYYMQAGDDFYKISNKDPFGFGSSIPLLKGMGDFKVRIGTRTEFYEVQAEIKIKKMPNSDYSLKPGSKKKNPFLK*
Ga0114973_1000056323	F037059	GGA	MAQFNTGNNAYQAANKTLFEVNQIATANGSLVTATNPFPVSGTIITLEEAGALYSFNNHATNTNRGWTMDDTMRPIVSFRNGSANTADIIKIVEYEIGNNNANASTIIYEWYEGDIAITGATIPAWTTFGVHSQYRVYQDKNSSNQGNAFTPNGAIMRHSGIIIGKNSSADEGPANMHGGETPNMMTLCMKRVDSSTKLDVWFAFTIKELI*
Ga0114973_1000056330	F023846	AGGA	MSDRAKKLTELTSIGTANTSIASGDIFIVEDISANTTKSATLSTLRKAIVQGPYADDTAANTAGVVLGQLYYTAAGVVKVRIA*
Ga0114973_1000056336	F004477	AGAAG	MGLLSFITKEETITSLQDLELAKGKIQLTIMKMAAFILGLIMVAVVFTMMVGLFVPNSVIDNNEIFKIIGPAFSTIVGAFVGAFATMMGMKTAEFDPNVKVQELGKTDHVKIAQARTEEAKAHSIELDNEAKELELVNKYHDSDEDHGPF*
Ga0114973_1000056340	F028803	AGGA	MTDLVANEYGVEFDHIAITKLRIHRTNGMWLVEYRRVPRWPLGLDRWWWFDDGTYTDYADASNRVDHLIGQGYVSKARFQTVKEFNFE*
Ga0114973_100005637	F074883	GGAG	MVNYKIVNTGKIVDVGGGFGDILETKTDQIVIKGMRMSKAKEMVRHLNFGGGFNGQTPAFFLANPQKNLELSVELV*