Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000552 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000552 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28483
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (54.35%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28483

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (54.35%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002826	Metagenome / Metatranscriptome	527	Y
F004010	Metagenome / Metatranscriptome	457	Y
F007467	Metagenome / Metatranscriptome	350	Y
F007747	Metagenome / Metatranscriptome	345	Y
F037193	Metagenome / Metatranscriptome	168	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000055210	F041081	GGAG	MLVHVGTNKERGNKIMIMEDVSVDFEFNGEKYTAYGNAEIDTIKEDIGPVGYREHYFAEVVNNVIMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK*
Ga0114973_1000055213	F007747	N/A	MKIGTITFGKSRPAPKMVLVDVDYDKKTGAELFKTGMRLLKKDKEAVIEYVIKKALEYGIKK*
Ga0114973_1000055221	F004010	AGGA	MPLGKNVSKNMSELAADNRKKGSERGAGGKPRSREQMIAIALSAAGKSKPRKFKAKSGV*
Ga0114973_1000055222	F002826	GGA	MEVEAKKRLRWARDMLAIARNKLVVERNRASHGHAIDMIQIITMVDAASLVCKEVVGGDDENKG*
Ga0114973_1000055223	F037193	AGGAGG	MKTKDELAMQVKKEWDEKGWRWKLSLSAGGFTSEIHCYGTAENEYFNCVKNLVDQAYQMQSV*
Ga0114973_1000055244	F001459	GGGGG	MRRLRAIMAFIRHQEWVDEPKWEAEDERALTGFLGSLTGKKLGLILLNLTLRQNASAVEKNADSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGADEPAVD*
Ga0114973_100005526	F007467	N/A	MTEKEAWEYFEDGLKDAQSFDEAVEWVKKNQKMVKKLTMQAMIRKFDEDISHANKTWLN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000552

Overview

Ecosystem & Geography

Associated Families

Sequences