Basic Information | |
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Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10000552 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28483 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (54.35%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001459 | Metagenome / Metatranscriptome | 690 | Y |
F002826 | Metagenome / Metatranscriptome | 527 | Y |
F004010 | Metagenome / Metatranscriptome | 457 | Y |
F007467 | Metagenome / Metatranscriptome | 350 | Y |
F007747 | Metagenome / Metatranscriptome | 345 | Y |
F037193 | Metagenome / Metatranscriptome | 168 | Y |
F041081 | Metagenome | 160 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114973_1000055210 | F041081 | GGAG | MLVHVGTNKERGNKIMIMEDVSVDFEFNGEKYTAYGNAEIDTIKEDIGPVGYREHYFAEVVNNVIMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK* |
Ga0114973_1000055213 | F007747 | N/A | MKIGTITFGKSRPAPKMVLVDVDYDKKTGAELFKTGMRLLKKDKEAVIEYVIKKALEYGIKK* |
Ga0114973_1000055221 | F004010 | AGGA | MPLGKNVSKNMSELAADNRKKGSERGAGGKPRSREQMIAIALSAAGKSKPRKFKAKSGV* |
Ga0114973_1000055222 | F002826 | GGA | MEVEAKKRLRWARDMLAIARNKLVVERNRASHGHAIDMIQIITMVDAASLVCKEVVGGDDENKG* |
Ga0114973_1000055223 | F037193 | AGGAGG | MKTKDELAMQVKKEWDEKGWRWKLSLSAGGFTSEIHCYGTAENEYFNCVKNLVDQAYQMQSV* |
Ga0114973_1000055244 | F001459 | GGGGG | MRRLRAIMAFIRHQEWVDEPKWEAEDERALTGFLGSLTGKKLGLILLNLTLRQNASAVEKNADSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGADEPAVD* |
Ga0114973_100005526 | F007467 | N/A | MTEKEAWEYFEDGLKDAQSFDEAVEWVKKNQKMVKKLTMQAMIRKFDEDISHANKTWLN* |
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