Scaffold Ga0114973_10000491

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000491
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29888
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y
F060898	Metagenome / Metatranscriptome	132	N
F090403	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000049110	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVTEEDAGTQAKTFEDVQRQALGINASGDDIVSLQGSFAEQAGFGIGAGLGYIEE*
Ga0114973_1000049125	F090403	AGGCGG	MTFNAQYTLETGAAKKRKREEEVAYWNSLNGPVVIKSVKGDDDGE*
Ga0114973_100004913	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGLKNKADIVAALTEEGVTWSVYQKTIKDIEKAADEFSEDAEEILPRFNPDAQPENTLLVRMTRENYRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA*
Ga0114973_100004914	F058150	N/A	MEILVGSNSPVTHKVFWQGQLTDSDSLPVVRLYDITEDPAISPPINPGTILATLTAVKSEVDAGTYVVYIPVSYTTRQRQLRLSWSYTVGSVSTEKNHKIYVQTPYTDLSQAIDSLGLGSDFSDPNSKSYFELCSAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPTNDVWNGVFKQGVTYRVQGKFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI*
Ga0114973_100004915	F056615	N/A	MYDLVDSVMPMFLDVYRQFDLQDPDTGSIKKEWQFDRTVPCSAKGIISNSSSSRTGDRQVMSNKYTNDQILQIRTSEKITLREKITNIRDSEGTVIWEELNFPTNTPTVFELMGTTPMTDPLGGVLGYNSTVKRSENQTIG*
Ga0114973_100004916	F035307	GGA	LDNSSLLVTAASGLQKGMAGTKGTVLRDSTVAQISAAIYYHAQVVSKLTTNKQFQKKFQSVIFKQIEEDFGLYVDSQSRMNPKSLHHVYEWKKTGNKNSRLFKLKVLSTDGLSFKITSSFLPSKSAVPNQFGKRRHVFINKASVMEAGIPLVIRPKFAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNTAIKRSGFQQLFNSSLTKAMRVPSDVRKVKYSFNANTLNMNAESAIASAFGGAV*
Ga0114973_100004917	F000258	GGAGG	MTDYKADIMLDLRKYLWSELKANNIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSIDVSDINEVRNLMTDLFRRMDDSARDANAYSGISKKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHLGLTGRFA*