NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10000485

Scaffold Ga0114973_10000485


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10000485 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30065
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (24.32%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015061Metagenome / Metatranscriptome257Y
F046327Metagenome151N
F073100Metagenome120N
F089880Metagenome108N
F090571Metagenome108N
F094938Metagenome105N
F097609Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100004853F094938N/AMKDKPTPTQETEVKTECKTEANTTIDFALKREIYLRLISASASDGKFDLGKLPNAKAVVNQGDHLRGVAELLTQCLK*
Ga0114973_1000048530F090571AGGAGGMSTDKAYEKASRFMDAALTIWESQDKERYCIAENYWNEGMKIYNEHFIQRNVLTELQDIDTLLP*
Ga0114973_1000048533F073100N/AMDNTNENNELDKEAERMLAAVRQTVLITNMSLAAALNTSFIAQYESDQGICNMALKPNNTAVVATTAATGLTIYQSNFFIKDDSIGEQRCIYKCENEDDADEIWDKINHRIHQWSRDEIKSVNIE*
Ga0114973_1000048537F046327N/ASAGDNPHTRWAMPKGASNFDTVSPEMDKWETETGVCLFYNGMRSPNFSAPANEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTDEEPLWDSEGFHKVAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMWLEKQKVIQLSAREAAEFEVGLAKEVVELCRASGVQPTKFGMDVSGDGGRVAQAIIREWLRFDASGHSIALISSMGKPTDRMAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVIYGVGAASELARELCIRRYFIKSKKISVETKDDYKGRTGYSPDLADSFLYCLEMSRRFGLVFIGNDKAVPTNRFWAREEKPVESFSDDDSYSSDENGDW*
Ga0114973_100004855F097609N/AMSNQLEGLEPKDIIKKVTGTITKLFPEKQHEGNFGPYTIQNGEIEVDGKNYKLAFWKNTQPESAKGRTVTLSSTRGKHGLNGVTFEEENYKNKEGQSVHNEVIKVSASARVEYDGASDEPVRVSPKSIVTDNPVEALDKIVELHKYVDSLVRHAYKGVEDEETLRAYVSSVFIEANRKGIAFKSEKAEPVKVEPPKVDPADWASAIVPSGTQKGKKLAEIGKPALTKLYEFYLEKGFNTPFAKCVEQAAADLDLDAPVETDDIPY*
Ga0114973_100004856F089880N/AMKKELELFSPTQEGILVPVATYLRQMAEFVKTEWPGFAITETHIKKAWAKLQKNEYLDDGTPDEMLEMYEKMSADWDMALELEEERINVANSPVEEPVNESLALIESVKDGLELSSFTKKFDIGAGMTQCVPRGKVEMKDWVAAFAFGLTLESGAQWIVGDSVVALENAGHDDVINQLCANFKKSYSTVSGYARACRAFPAAKRDASLPFTVYREIGNANFGDAKTNAKKQQAMLEVAKVEGLSSTEVRNRVRNEQGKDDKSVLPHRYLVLNVGNYGNSEVKRSVPKKLEAHHFLIDRQDMSWFDAAQGEWVKFAKEQ*
Ga0114973_100004858F015061N/AMSEKNQQNETSKTILEAFSFIKCEDEKLNERVHAFASLLHTAAMMVIKSESRKGEGFECIKYLELGFLYYKESQFRKRFDTEEKEEEAPRIIT*

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