Scaffold Ga0114973_10000485

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000485
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30065
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (24.32%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F046327	Metagenome	151	N
F073100	Metagenome	120	N
F089880	Metagenome	108	N
F090571	Metagenome	108	N
F094938	Metagenome	105	N
F097609	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100004853	F094938	N/A	MKDKPTPTQETEVKTECKTEANTTIDFALKREIYLRLISASASDGKFDLGKLPNAKAVVNQGDHLRGVAELLTQCLK*
Ga0114973_1000048530	F090571	AGGAGG	MSTDKAYEKASRFMDAALTIWESQDKERYCIAENYWNEGMKIYNEHFIQRNVLTELQDIDTLLP*
Ga0114973_1000048533	F073100	N/A	MDNTNENNELDKEAERMLAAVRQTVLITNMSLAAALNTSFIAQYESDQGICNMALKPNNTAVVATTAATGLTIYQSNFFIKDDSIGEQRCIYKCENEDDADEIWDKINHRIHQWSRDEIKSVNIE*
Ga0114973_1000048537	F046327	N/A	SAGDNPHTRWAMPKGASNFDTVSPEMDKWETETGVCLFYNGMRSPNFSAPANEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTDEEPLWDSEGFHKVAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMWLEKQKVIQLSAREAAEFEVGLAKEVVELCRASGVQPTKFGMDVSGDGGRVAQAIIREWLRFDASGHSIALISSMGKPTDRMAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVIYGVGAASELARELCIRRYFIKSKKISVETKDDYKGRTGYSPDLADSFLYCLEMSRRFGLVFIGNDKAVPTNRFWAREEKPVESFSDDDSYSSDENGDW*
Ga0114973_100004855	F097609	N/A	MSNQLEGLEPKDIIKKVTGTITKLFPEKQHEGNFGPYTIQNGEIEVDGKNYKLAFWKNTQPESAKGRTVTLSSTRGKHGLNGVTFEEENYKNKEGQSVHNEVIKVSASARVEYDGASDEPVRVSPKSIVTDNPVEALDKIVELHKYVDSLVRHAYKGVEDEETLRAYVSSVFIEANRKGIAFKSEKAEPVKVEPPKVDPADWASAIVPSGTQKGKKLAEIGKPALTKLYEFYLEKGFNTPFAKCVEQAAADLDLDAPVETDDIPY*
Ga0114973_100004856	F089880	N/A	MKKELELFSPTQEGILVPVATYLRQMAEFVKTEWPGFAITETHIKKAWAKLQKNEYLDDGTPDEMLEMYEKMSADWDMALELEEERINVANSPVEEPVNESLALIESVKDGLELSSFTKKFDIGAGMTQCVPRGKVEMKDWVAAFAFGLTLESGAQWIVGDSVVALENAGHDDVINQLCANFKKSYSTVSGYARACRAFPAAKRDASLPFTVYREIGNANFGDAKTNAKKQQAMLEVAKVEGLSSTEVRNRVRNEQGKDDKSVLPHRYLVLNVGNYGNSEVKRSVPKKLEAHHFLIDRQDMSWFDAAQGEWVKFAKEQ*
Ga0114973_100004858	F015061	N/A	MSEKNQQNETSKTILEAFSFIKCEDEKLNERVHAFASLLHTAAMMVIKSESRKGEGFECIKYLELGFLYYKESQFRKRFDTEEKEEEAPRIIT*