Basic Information | |
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Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10000463 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30669 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (55.56%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011825 | Metagenome | 286 | Y |
F021920 | Metagenome / Metatranscriptome | 216 | Y |
F050860 | Metagenome | 144 | Y |
F085063 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114973_1000046325 | F011825 | N/A | MEQNKKPVDKFYYSEQEWDRLGCGPLPEERDRAKQHLDACAKGNPKIDGKNVKGYN* |
Ga0114973_1000046332 | F050860 | AGG | MTDYKKLNDRIVRQAWEVSNLTLTEEMKTQLFQNKIRRAAEALRAREQNPVYFQIED* |
Ga0114973_1000046338 | F085063 | AGGAG | MKPRIASRGPAIDMEQCVRQAGGGRYDMVLIGAQRLRELKRIHREDTTRYVTCVDALNEIQAGQVNLVDYLAKVK* |
Ga0114973_1000046339 | F021920 | AGG | MAKPQQTSSELGRTLAGQWTKSEKREYASRSIMESNQRTKAINKAIKQQQFMK* |
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