Scaffold Ga0114973_10000463

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000463
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30669
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011825	Metagenome	286	Y
F021920	Metagenome / Metatranscriptome	216	Y
F050860	Metagenome	144	Y
F085063	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000046325	F011825	N/A	MEQNKKPVDKFYYSEQEWDRLGCGPLPEERDRAKQHLDACAKGNPKIDGKNVKGYN*
Ga0114973_1000046332	F050860	AGG	MTDYKKLNDRIVRQAWEVSNLTLTEEMKTQLFQNKIRRAAEALRAREQNPVYFQIED*
Ga0114973_1000046338	F085063	AGGAG	MKPRIASRGPAIDMEQCVRQAGGGRYDMVLIGAQRLRELKRIHREDTTRYVTCVDALNEIQAGQVNLVDYLAKVK*
Ga0114973_1000046339	F021920	AGG	MAKPQQTSSELGRTLAGQWTKSEKREYASRSIMESNQRTKAINKAIKQQQFMK*