Scaffold Ga0114973_10000460

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000460
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30731
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.43%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F008080	Metagenome / Metatranscriptome	339	Y
F009682	Metagenome / Metatranscriptome	314	Y
F014128	Metagenome / Metatranscriptome	265	Y
F028094	Metagenome / Metatranscriptome	192	N
F059894	Metagenome / Metatranscriptome	133	N
F065779	Metagenome / Metatranscriptome	127	Y
F069711	Metagenome / Metatranscriptome	123	N
F080979	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000046012	F028094	AGGAG	MSKQLQFDFRSPEEVARQRKIAEENEKVLNDMFSNDDYVYNRYVDFLLDLIPFRWGWRAKNWPRAIRWWAKCKYQKIRYGVSDDDVYSLGYNIALFALPRLKYFKKKGKTGIPCCFLPDDFHLLEGEEQTAAEEKGVKQMESALDEMIFAFEYIIDGDKFCELPESLSFKGKDFDFNSEKTIEEKESWKQYMEKANELNDRKNNGLALFAKYYDTLWI*
Ga0114973_1000046013	F069711	N/A	MKFTSEQRELIKETRAKISKMQIEQNELYTNLLRELNLSERSEDWIFDYVFNQYGTIKDIESKSSKKS*
Ga0114973_1000046014	F080979	N/A	MQDNKPINMTKISLKEEKNYKLLKEGQDFLVGDLIHLVDDEYVKLNENNQLLNTKVTKYNKVLRKAK*
Ga0114973_1000046019	F014128	N/A	MEQLQKMGIQIGFLISGMFGAILMATKNDKTDTKSVVLSLVGGMSAANFLTPVLVDTLNIVNIKHQNGVAFIAGFLGLKLVELVSEKLLEKVGKPDKIQKKKTIKKRIPKR*
Ga0114973_1000046022	F001732	GGA	MKRLLILFMGLLLSGCFSTIKPAKQIDDNQKAIAKEEKKVDNTLVEIEKNDKGKKIQTSGLSAGIQHSLNQITNAPVQVDTARKLNERVISIVGSPHIDEINRIKATVDLLNSALVEERKKGEELLSQRDELINKLQKEKSELNQKYDDQLWQLTDKAKEIAKEADQNKAVLDTMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVHPAAGAAFSIFNMLGSSVISVIKMLTPKAFEMSNFATKDKVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSEILKRFDKEMDSHEKDLIEEILKEQKWIK*
Ga0114973_1000046027	F065779	N/A	MDSQSIAISINLKIKDQEILLSMEEARDLYSQLKGVLGYNNQLYTIPYSWGNPSPYVTYTINCSDSANSNWKTA*
Ga0114973_1000046028	F008080	GGA	MLKIQIWMRGTMEYSQDTIPGPTIDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNISNDEKPVFVTSNWEDFEFERGGGSNYVPEPPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDANKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED*
Ga0114973_1000046037	F009682	N/A	MQKDLYIKEKSQNIVVKNDDLIFDGKNIVIPSYYASIISEYLDNVDLKGMDLNEADFHDYLAFCSFFEAITDFKAANQGN*
Ga0114973_1000046046	F059894	AGAAG	MKLSIQFITESENYYNSPILEVYVPSKTALKKFLETFKPKHRDPAEVMLDFIIFAHSAIKTVAIKNSEDRDYSQDLIAVEVRTPNVVEFVYKKDDGKTDWRKIDILEEDKYYVKGHDLNDDNSFKSFKKTNIVGGRMIKN*