Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000329 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000329 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35529
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (26.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35529

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (26.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F028725	Metagenome	190	Y
F034061	Metagenome	175	N
F061497	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100003293	F061497	N/A	MIDITLEGGFVTFYSSLIGAIASNVESVEVVDDMSVHLGTNVGVFLINVNQFTFNSIKFTNSTKAYTYITNN*
Ga0114973_1000032938	F028725	AGGAG	MPLERFSMSMALLERLSSGISGSEMEGILEGMEKALAAGLSNPKNAALVATYIHIIRERQDTIIHRDLLLNIAATWIIRDDEDPTIINNDIHKEKLEVFEKMCMEGSHDFFTRLGIEPLIPLMSMSAEDMQKLWVYNVEAQRNLIKALTHLDSLHDTERVKRPRELKLK*
Ga0114973_1000032942	F005050	N/A	MGCASYCESGLEAHDLVACGEYKLGGVSAIIIGACGATLVDPTSPEEIEEMLISGDAVLVEDIRFSLPAGSPIQVDSPVGCGTQIRINEDRTATLYDANVTDQNNSFYNSLNAQKVGWIMAYLCDSGKVIYIDPPVGITTSANFIIPEQNNELQRYEVTFSWRQKEIPTQFTAPAGLFN*
Ga0114973_1000032949	F034061	N/A	MCFEKLVGLKGCQLSEPSTGLYIDDLGINTTLLGQLITDQYNTGVELFEGKRAFAWRKLSSDILTRLQATMKADTIIENKRIGQVLTNASNVDLALGAGRYAGIRVKIDPNNTSFLNFYLSQLQIDIYTMATPVEILVFDMTTLKLIDSFDYQSEAVEEFIGRTFKAKRRKLDLAFVYESLYDTTKMITKKGACTDCGGRLKEAHICPFVDAIGIELTTDGLNVTSSLSKKYTQGMSFVYNVNCDRESWLCSIGGLMAMPLAYATAVEIFNYALTISPNQRVNTAVSVNKGNKVFATADATEGIVAARDIAATRYNEELSAMLTNMRLPDDRHCFDCNKNYKYVTALP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000329

Overview

Ecosystem & Geography

Associated Families

Sequences