Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000277 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000277 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37933
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (74.51%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

37933

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (74.51%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F001774	Metagenome / Metatranscriptome	636	Y
F003150	Metagenome / Metatranscriptome	504	Y
F012854	Metagenome / Metatranscriptome	276	Y
F024029	Metagenome	207	Y
F036197	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000027717	F012854	GGAG	MIDITSAIYKLYPNVVRTVGNTAYDADGNEVAYNLRAVTAQAQTDAQAVIDTKTSALAKLATLGLTADEIKALIR*
Ga0114973_100002772	F001774	AGGAG	MALKLNLASTQFGVPAPQAYARITNFFGTKDQIQVQVAIYYNEEARHGNMATVKENAHYIAIEDLEGDLIPAIYGVLKTFTDYEGAVDA*
Ga0114973_1000027724	F003150	AGCAG	MSDPFGITDGVKQVTKSINESVKASQELSKAIDGVLEVADKAAKERADSRKKARQVNPDTATIIEAVDEWQQLLIARQSEAKIQEQITKKYGSHAWDEIQGIKARKQWEERQDRYLEQHDRRVMKSVMLLCYIFAGWIAYELTWGMWR*
Ga0114973_1000027725	F000340	GAG	MNIQDILKAVLPIVVACLAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEARHRLKEEVYKDIHQLQVKVQLLEEREKGRK*
Ga0114973_1000027729	F024029	AGG	MNNEHIWTASGTNIEERWAKKYGWIRPSELLEYQAKYKYFQELPLRRLDDIAKIEYEMALKKARVARVR*
Ga0114973_100002779	F036197	N/A	MPLIYLEHPDHGNKVATMEQEAEFDEQNGWVRYTHDTPSISEKVETVEEATEVAAPVNTLEVKRRRKTAQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000277

Overview

Ecosystem & Geography

Associated Families

Sequences