Scaffold Ga0114973_10000230

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000230
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40732
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (86.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F001515	Metagenome / Metatranscriptome	679	Y
F085351	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000023022	F001094	GGAG	MNKEKIKAIVATYLRAAVASVLALYLAGTSDLKTLALAGVAAVAGPVLKALDPNSSEFGVGSK*
Ga0114973_1000023033	F001515	AGG	MMVKNSSFDLDFGFGRKGEQLVEALLTEGKTVEVKRDRKWWSTNNIYVEVECWFNKSKSWEPSGLMVTTAEYWAFVLERGVIMIPTDHVHYAIKEFGREITCEIPPNWSKGYLITVEDLMVAMRILKNG*
Ga0114973_1000023052	F085351	AGGAGG	MANTSTAKYPNNQPGKASKPANQGGAGKANVAGPVNAGMPKASKPSASTTMFSKQPSGTRGSK*