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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009068 Open in IMG/M |
| Scaffold ID | Ga0114973_10000150 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 48198 |
| Total Scaffold Genes | 87 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 59 (67.82%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001443 | Metagenome / Metatranscriptome | 693 | Y |
| F011824 | Metagenome | 286 | Y |
| F043797 | Metagenome | 155 | Y |
| F051655 | Metagenome | 143 | Y |
| F068392 | Metagenome | 124 | Y |
| F071237 | Metagenome / Metatranscriptome | 122 | Y |
| F104705 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114973_100001501 | F071237 | AGGA | MADESAKGAFIEKLLFALLPLLIGSTGYLISALGALQHDVTILNQKVSLVVTTDNKQSVNSGAELA |
| Ga0114973_1000015023 | F001443 | GAG | MPMYETTVRTPTGETKDRVWAKDLAEARMLLEQRHGPRNVPYIPHIIPS* |
| Ga0114973_1000015046 | F011824 | N/A | MSLSNYRSSEPIFTVVHRDTAANDRLNKWSKTSRSIQCRVEDNRMHIYDHNTFSLFIMTWTHGWDHVVIWDPWAKRHVNI* |
| Ga0114973_1000015047 | F068392 | N/A | MFDDADLDQSIRLSILNLMVVLYDCGITEVHIGGVMRVLGVSDSMAEKHDNERLVLDEEFVKYVEQINEPRPVDQRLH* |
| Ga0114973_1000015057 | F104705 | AGGAG | MTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNSRFDTTRFLTACGV* |
| Ga0114973_1000015071 | F043797 | GGAG | MTEDRLMIAEAVMAGQIPEYHLTQDEIDELFEIACDAATDKLMVEAEQRGCSVFDGIEGDTLQ* |
| Ga0114973_1000015072 | F051655 | N/A | MTIPFKKQFIDDQGRVFSVNEVVQTPVGLTVYYYNTETQQEYSCLIDSFTERFREIQND* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |