Scaffold Ga0114973_10000112

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000112
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53363
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (74.70%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F011482	Metagenome / Metatranscriptome	290	Y
F014841	Metagenome / Metatranscriptome	259	Y
F025725	Metagenome / Metatranscriptome	200	Y
F027488	Metagenome	194	N
F029091	Metagenome / Metatranscriptome	189	Y
F057363	Metagenome / Metatranscriptome	136	Y
F068570	Metagenome	124	N
F102814	Metagenome	101	N
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000011218	F006261	GAGG	MAVLSSGYTTTEPILIANAEIWSFTAVESPTIQVTQLRVQQPLNSSIVESYGVFKPLGASKTIVVATSIYGIDGSYEFTTQGETEWDALYPVLTYQGILHVHDPLGRQKYVRFVDRTWTEVGDIANLIRNAKVNYYEVEAP*
Ga0114973_1000011221	F057363	AGGAG	MDKKLQAMLASYGRSFLSAITAAFMITGGDILALDGDSLKAILAAGLAAVLPVAIRAANPKDPAFGKIAEGVFQVLVKKTTVLKTPKKK*
Ga0114973_1000011223	F011482	GAGG	MAEEIQPTLGEVMRRLDDLTMEVKQMNLNVGQTYLRKDVYDSDSERFSQAMEHITDRLEKMESRSEWVIRTVGALFITTVVGASMYIGQSIGI*
Ga0114973_1000011227	F027488	N/A	MLAAKGRCSVEYVRKVINQMVEEGHIKIISKGNSRGKATTYQLLWKKLPNSVGEALPIEDDELPNSDTPDSPTLEVSLPNSTPQHPSYTSVLSTTKSDETAIAVIALAEVVARRWWEKQRVKPLGKGAWHSLLQITKAAEARGYSEQQIELALDYIGTVPTMRQMDLVLRGVGVKTKHETGAIRAIELSEKLRNESF*
Ga0114973_1000011242	F029091	GAGG	MAQKAVKKIGQYRLYKVEGYGYYEIYYGTKTTGVHVENIGHKNNFEWAVGEIKRATQQAVNAEFGVGVSN*
Ga0114973_1000011256	F103142	GGAGG	MSLDYKGFEWGERISSDYESVDRFLHEKIVVPEAPSVGDLHGAAEWLATYASETAEDAQGWANVVAFLILTAESKQKRSAIAEAKRAFAKEKGIPVSQVRIKREAEVIRQGLALIPDKIDN*
Ga0114973_1000011258	F102814	AGGA	MAGTKPRDSQKQRLYDAQRLAGFYDTGEVMTIKEAQKFVNQVLSHQKTKKLHEQYRFQFSTYPSKILVEAGNGNHATMRNRNWETVRLIRLNKFGRNKFIILHEIAHHIVWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNVKRVKVMTKTKKARVPRKREIESARLVA*
Ga0114973_100001126	F008607	AGGAG	MADAIYSKVAEFMTDSVVFTAKTAVDKYNKPTFSGDTTVVGRLIYDTVKSKDVQGIEVVDVGRFITKGPATTIAVSHKMVIGADTFTVNGVHNISDENGAHHTVIRFGR*
Ga0114973_1000011268	F014841	N/A	MSEENKKPSLIDDALAEIGRIAFLDPSICTGWVLVSEWMGEGEKEYWTLTLADDDNPDWRHKGLVHHALATWEANDDIGFKDDPKD*
Ga0114973_1000011281	F025725	N/A	MKSIIDSTIEILSSMNLKANKVTTPPGYAGIQIDLPNDSQAFFVWSKMDDDDFHFRTARFWANDNPFSMWICPNLPEALAQTRVLIK*
Ga0114973_100001129	F068570	GAG	MEETQQPMSSSDAGNATGSSSKAQRARGVSAVPAVNPKINQDEFVSALDKLVGVWKVQDGCSVRRITNELPEPARTKFKEALMNEKINSARLVELLATFNIAVGSDVMRRHRRRLFGKDGCKCPIEH*