Scaffold Ga0114973_10000093

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000093
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55569
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (19.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F020649	Metagenome / Metatranscriptome	222	Y
F034466	Metagenome / Metatranscriptome	174	Y
F038565	Metagenome / Metatranscriptome	165	Y
F047507	Metagenome / Metatranscriptome	149	N
F050171	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100000932	F038565	N/A	VTNKKKFNFPESLLKQIDECSFGGYIMFNFSSKGEPQVYTKFDNQINAMALLYYVNTWSQSVDQLNLEATTDQIAKKNLEEDDFDDSEEDRD*
Ga0114973_1000009336	F020649	N/A	MAIKIKNWWGNLKTYDKFFFITFIPAILFTLWGLSDLYINYFDLLSKEDHLQFFLRVFFPISIATFITVLEHNKRKKLIKDIKTYLND*
Ga0114973_1000009339	F034466	N/A	MDNQLRNLLLNNYERNLPSKRDTEDFISNFHQYRVKKKAQEKTHYGLLFACILVLTMIGSIVAKQTKNNLDIQTASGQVQK*
Ga0114973_1000009341	F047507	N/A	MLKEKNKLWNWKSKTISVGLALIVSWVACLKIGFELKKYNSITNLPNSCFVDSMIYASRCNLLLISSSDSWNSVYGFTFGYKDDKEAILGHAVCVFEYNNNLWMYDPNWGTSPVCKIGDRKRYKEKIRLYINKTYPIIVIEDFMLNDWTYVQKTKKNKMNKTYKEVSIHLDEDKKE*
Ga0114973_1000009352	F017268	N/A	VNLDITLLFNLILGALSFLGGWLFTRVFSLFDKQENLMKEINDKTFSDFITLRKEMESESRKHQQEISDLALKISTTYVTKESFDDYFDRIEAKLDRNFDIIQNHFNKNNKN*
Ga0114973_1000009382	F050171	N/A	MGMFNYIKVEQDLPINDELKALNIDFKKEEFQTKELEDNVMATYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVEDSREEIFRDDYTGTFTFGTYVLGQDKESYDWFPDWKCVVVKGLLTEISLIKPIEKNSSGTRIELDEQFKKQLDDHERKMKCPVYSFYFKYYVKTMNLIEWKLDALIGRIIRLLDWLRWKGIRKLIRILTPR*