Scaffold Ga0114973_10000089

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000089
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55881
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (76.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005294	Metagenome	405	Y
F039525	Metagenome	163	Y
F042295	Metagenome	158	Y
F043830	Metagenome	155	N
F047558	Metagenome	149	N
F063386	Metagenome	129	N
F082375	Metagenome	113	N
F085338	Metagenome	111	Y
F091924	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000008917	F047558	GAG	MVTKKVPAKVAPVKRRTATPKVEVASKPEAKKDDSTVGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAERLKKDLEAETVLVHKVALVVNSRVTLLSYGPKGRDTTLDGYNSTLFGKDATRNAAVIAMMNGEVHCDKLVASGKTSDWEEKQGVGFICRGSIPPEMGAFEGYISVGFTKEPQDLGAVKTRINLASTEMAK*
Ga0114973_1000008923	F005294	GAG	MATILSVSQVYDPRFHTFVSWASLMCELYSVQNLAIPDANTDWKEWASGLKAIDVFTNEGIPGPYIYDDWHEWAEALVNAVNPAVN*
Ga0114973_1000008928	F063386	N/A	MKIDEKGELQADWEAIERFTKCFDKGCKSEQAYKAKLFSLVLEHGYDAAMDDVEYERKEILFMLCTPAGNA*
Ga0114973_1000008929	F082375	GAG	MTPKDFVTELFGEGWKPSQLPSFLDAIKGWSEDSQRYYAVRDFAKKLEWAIDPRDRRECHEFDDLVDSKRFEHDLDEN*
Ga0114973_1000008930	F043830	N/A	MNPYLNTDDIKQAFFKINLEDNYSFLEEDLQKLADAFIMAAMPAIVKTERDMCIKFVNTINTNVARALGDYRENL*
Ga0114973_1000008941	F042295	GGA	MALNNFTKFNKTEAVDDSPNTLECYANGCPMAGGISTGGRWVCAYHHQAFSDEWPRVTEALRDAEAIRLAITEVMKIDMISWGANTGGYPPKWQEFAALFDNYPELQPNEHEKIRKTKYEYRLRNELAIRAGLAKRKA*
Ga0114973_1000008942	F085338	GAGG	MTKSDAQKILDEIRGGFGHAYTETCTLECLNLTGDLGAHETVRSSGVDESVREEGYRARLRQRAIMVARSKE*
Ga0114973_1000008957	F039525	GGAGG	MSETNMNPYVKGFNAGVDCVLTEIERLEKIAPINLEQLLKHLDPQRDQKTAQTPDKGVS*
Ga0114973_1000008962	F091924	GGAG	MTEQIWEADWISENPELANKAITELHTQVQELESKLKHANNKVAKLDAQNREFKLTIKDMDRRIMKGLKD*