Scaffold Ga0114973_10000079

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000079
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59253
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (46.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066475	Metagenome	126	Y
F078162	Metagenome	116	N
F086536	Metagenome	110	N
F098564	Metagenome	103	N
F100277	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000007912	F100277	AGAAGG	MPSLKKSSSIPRKLGVKGEDTILKDAIDFLFQIKGIQYIQKHPDFVTPSAEEFFSHVTNLATEGLSSSPKKRTCLSNHFISFLCFLTPMFHDVHMCSSILSSLTIATYALTLYTTTGTYLREAPATAPLNKALQMIDTTATVNSIHPSLNHFVTVYMPYVPKQAIEKLVAVTEEFMRRTITRLPTHVKSHLPALDIQEIGKDICQGLDTVYNCSPFFLQWKAPVAVLLTRCGMEPCRSMCEEIANFVKSKSHMLTV*
Ga0114973_1000007918	F086536	AGG	MATATANKDLVEAVRHYVHFDNLAEALNKQVTNARSMRGQYETKILTNLESTGMKNAVLQINGATLQRASRVQANSLSWGFLEEQLHAYYASHPVRSGDETTAILDFLQNRRGSKTTEYLKKTVLGGADAGSKKPPT*
Ga0114973_1000007942	F098564	N/A	LLENPGVQGLKYELWQGSTLYLITPILGKATEVSQTTDAILKWLGAAPGFNIYIWFRDDPRELKANQWPTKAQVNGGWTTVGTPNIVIYRSEEWERVLIHEMIHAMKWDWDVGPTPAPCWKMNKTDKLNPHLFEAWTELYAEWLACAWYGKPWAKQRKWQDLQATQLLARATHKWEENTSVFAYYVLKAALAPHFEFLWVFGQGKTPEEKQYVMCGLVTPELERLRTIAKQTTLQDISMRMSVPDVLDGLKR*
Ga0114973_1000007944	F066475	N/A	MSATSSRDRYTEATGDLAEHIGDKVLLLLKSPENQARIQSVLDPIISHIINRIFPYILLSAILFLILFILTIGTFYMVMRTSATMTYSTKISD*
Ga0114973_1000007945	F078162	GAG	VALIEMGCGTIFQRTSQFKTEPMFGVPERRADGNNVYFYVPMAKPVRLSVRLQQSKPLTILPDPSVQPKFKELQSKVLNELTKTETLFKNKPSYESLERITPQWGIIYTDDNKPQWNEYTAKEFYYDVEMGAYTNCIVDLELIGILITRSTISPKFAVKFVEKYTQSDVIDFDWQTPVNPAKEIEEVNDLEATADTNPLTLRSPALIAKEKTDAKEKVKVLFRTADEARQLALDAMGKFFGKYEVSDDESQFSDWMTDDDESTNSEA*