Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10000031 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10000031 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	81510
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (19.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

81510

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (19.23%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023065	Metagenome / Metatranscriptome	211	Y
F036563	Metagenome / Metatranscriptome	169	Y
F067544	Metagenome / Metatranscriptome	125	N
F085388	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000003113	F067544	AGCAG	MIDKWIYEDKLLNNGTTFSWTPKALEELDVSEVISALKIARHSDPVKVIANPTPQPEIPITWVTEFIAKFSTKNIGVSGKTTDKVSVVKRLIKFLAEYDYTLDEIAKATDLYIDTLKGQGSIRYIRECGYFISKKIDGVEQSDLAKWCEELKNGSGPAYNSHQIL*
Ga0114973_1000003153	F023065	N/A	MYTNSELIGRVKSANKFVSDDDLITDRYIYGLLKTKASTLLRREINLRRLLTSDNVYQAYECVHLIEAPGTECDLGCPVRRTKNKLPNIDEGLYSYFIQGVFNTSNSEELFPTTIRDFINHSRLRFKTPKKYYTIRNGYLYVLDPDVECVNMYAYFTESIEDIDGTECLSMYDKQFKFPGYLTDALIEMCTQSLMNYQRIPQDLEDNNRDEPN*
Ga0114973_1000003155	F085388	N/A	MTKCCPTNNCVEIVPSGCVKYTGTPTPGGLIDSFDNCDLYLNDLLKLLDDKVVNIDTRVGLNKTAFDTANQACGTTPVISTVGLTVTTDNKYYSAEVVLKLVGVICELRSRLNYLSSKDININSGNIFWMDLPLDLQFKTWLADQCLGDDPCFGDEILTLRQLLQAIITKLCNCCTP*
Ga0114973_1000003156	F036563	N/A	MNVQLNIEALKAKDCAFLSILDTSFYPVVPTSAEISITLPGFDDPFNFEFVISEVNIFTAYSFGLTVEQTDSFTPLPDGVYKLEFAPCPNVGVCTRYHLRTCKIDCRLGVQWAKYVDCCDDEKMLYYLDKIEFLLKGAEAHADLCNPAKATELYKKADDLLRRFELDC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10000031

Overview

Ecosystem & Geography

Associated Families

Sequences